Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G225400.1 | Wheat | cytosol, mitochondrion | 96.34 | 96.34 |
| TraesCS3A01G201500.1 | Wheat | cytosol, extracellular, mitochondrion, plastid | 95.99 | 95.99 |
| HORVU5Hr1G009510.3 | Barley | cytosol | 91.8 | 89.15 |
| EES00885 | Sorghum | cytosol, mitochondrion | 76.27 | 76.27 |
| Zm00001d009391_P001 | Maize | cytosol | 75.74 | 75.74 |
| Os01t0546700-00 | Rice | cytosol | 78.53 | 75.5 |
| GSMUA_Achr5P09880_001 | Banana | mitochondrion | 45.38 | 38.92 |
| TraesCS1D01G157200.1 | Wheat | mitochondrion | 23.73 | 23.69 |
| TraesCS2D01G336100.1 | Wheat | plastid | 20.77 | 22.71 |
| TraesCS6D01G355100.1 | Wheat | plastid | 23.04 | 22.11 |
| TraesCS2D01G324100.1 | Wheat | plastid | 19.02 | 21.71 |
| TraesCS2D01G326200.1 | Wheat | mitochondrion | 23.04 | 21.67 |
| TraesCS3D01G353400.1 | Wheat | cytosol | 15.18 | 21.22 |
| TraesCS7D01G103900.1 | Wheat | plastid | 24.61 | 20.29 |
| TraesCS4D01G279000.1 | Wheat | mitochondrion | 21.29 | 18.8 |
| TraesCS2D01G229300.1 | Wheat | mitochondrion | 24.08 | 18.5 |
| TraesCS2D01G115600.1 | Wheat | cytosol, plastid | 17.98 | 17.61 |
| TraesCS7D01G134400.2 | Wheat | mitochondrion | 20.42 | 17.46 |
| TraesCS7D01G362900.1 | Wheat | mitochondrion | 18.67 | 17.29 |
| TraesCS5D01G136000.1 | Wheat | plastid | 20.24 | 17.26 |
| TraesCS4D01G259600.1 | Wheat | cytosol | 23.56 | 17.11 |
| TraesCS5D01G237900.1 | Wheat | plastid | 18.85 | 16.31 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G203500.2 | EnsemblPlantsGene:TraesCS3D01G203500 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF657 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:253520100..253521821
Molecular Weight (calculated)
62722.5 Da
IEP (calculated)
7.362
GRAVY (calculated)
0.130
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKAVSRIPS STLTSLLPRA LNPHVAVVDL ITTHLTADAE PTKTLDLSGL LPYLGQDELT AVVLHAGHSH PLPTLRFLIA LPPPLQPSPP HLAFLAHSLA
101: TTRSFFHALD ALSHLLRLHP THDALPTLLL SYQTAPHPSL PGLLVKALLR RARLRHAFHA ALRAAASGFP PDTVAFNALL AALSRAERFN ELWAARAAMS
201: RAGVRPNAHT FNILVAALCR GEDAERAQGF LEELEEQGFE PDVVTYNTLL VGYCRRGRLQ DALHLFDVMP PRGVEPDLVS HTVLIDGLCK AGRLSDARRM
301: FDRMVNSGVS PDAVAYSVLI AGYCNECRVK EARLLLMEMV GKGLSSEGFA LKSVIESHVK IGKLLTCLNM ASPLRKYGVV IPLESYNCLI GALCEDMRPH
401: AARSLFQWMI EDGHSPSLEM YNMVVDCFCQ CGSVDEALDI KVEMSSRGVK PDFDTYRTLV TCLCRVGRSS DGKSVMAEMI ELGLQPNETI CAALVCGFCK
501: EGSLNKAELI LKAFVLDLQV CCNKSYNTLM RAYCMTRSST ESLDLQNRML ELGFVPSSDT CRSLVYGLSR SIA
101: TTRSFFHALD ALSHLLRLHP THDALPTLLL SYQTAPHPSL PGLLVKALLR RARLRHAFHA ALRAAASGFP PDTVAFNALL AALSRAERFN ELWAARAAMS
201: RAGVRPNAHT FNILVAALCR GEDAERAQGF LEELEEQGFE PDVVTYNTLL VGYCRRGRLQ DALHLFDVMP PRGVEPDLVS HTVLIDGLCK AGRLSDARRM
301: FDRMVNSGVS PDAVAYSVLI AGYCNECRVK EARLLLMEMV GKGLSSEGFA LKSVIESHVK IGKLLTCLNM ASPLRKYGVV IPLESYNCLI GALCEDMRPH
401: AARSLFQWMI EDGHSPSLEM YNMVVDCFCQ CGSVDEALDI KVEMSSRGVK PDFDTYRTLV TCLCRVGRSS DGKSVMAEMI ELGLQPNETI CAALVCGFCK
501: EGSLNKAELI LKAFVLDLQV CCNKSYNTLM RAYCMTRSST ESLDLQNRML ELGFVPSSDT CRSLVYGLSR SIA
001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
Arabidopsis Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.