Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G203500.2 | Wheat | cytosol, mitochondrion | 95.99 | 95.99 |
| TraesCS3B01G225400.1 | Wheat | cytosol, mitochondrion | 95.29 | 95.29 |
| HORVU5Hr1G009510.3 | Barley | cytosol | 91.8 | 89.15 |
| EES00885 | Sorghum | cytosol, mitochondrion | 76.09 | 76.09 |
| Zm00001d009391_P001 | Maize | cytosol | 75.74 | 75.74 |
| Os01t0546700-00 | Rice | cytosol | 77.84 | 74.83 |
| GSMUA_Achr5P09880_001 | Banana | mitochondrion | 45.9 | 39.37 |
| TraesCS1A01G160000.1 | Wheat | mitochondrion | 20.24 | 23.39 |
| TraesCS2A01G326700.1 | Wheat | plastid | 21.12 | 23.09 |
| TraesCS6A01G371200.1 | Wheat | plastid | 22.51 | 21.61 |
| TraesCS2A01G336700.1 | Wheat | cytosol | 22.86 | 21.51 |
| TraesCS4A01G023000.1 | Wheat | plastid | 20.94 | 20.44 |
| TraesCS7A01G109000.1 | Wheat | plastid | 24.78 | 20.43 |
| TraesCS2A01G339000.1 | Wheat | cytosol | 19.02 | 19.85 |
| TraesCS3A01G359100.1 | Wheat | cytosol | 13.96 | 19.51 |
| TraesCS2A01G114800.1 | Wheat | plastid | 17.98 | 19.14 |
| TraesCS7A01G360200.1 | Wheat | mitochondrion | 23.21 | 19.0 |
| TraesCS5A01G229600.1 | Wheat | mitochondrion | 19.72 | 18.23 |
| TraesCS2A01G223300.1 | Wheat | mitochondrion, plastid | 23.56 | 17.56 |
| TraesCS4A01G045400.1 | Wheat | plastid | 22.86 | 17.49 |
| TraesCS7A01G134800.1 | Wheat | mitochondrion | 20.42 | 17.41 |
| TraesCS5A01G128400.1 | Wheat | plastid | 20.24 | 17.26 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G201500.1 | EnsemblPlantsGene:TraesCS3A01G201500 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF657 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3A:+:336598409..336600362
Molecular Weight (calculated)
62770.6 Da
IEP (calculated)
7.147
GRAVY (calculated)
0.132
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKAVSRIPS STLTSLLTRA LNPHVAVVDL ITTHLTADAE PTKILDLSGL LPYLGQDELT AVVLHAGHSH PLSTLRFLIA LPPPLQPSPP HLAFLAHSLA
101: TTRFFSHALD ALSHLLRLHP THDALPTLLL SYQTAPHPSL PSLLVKALLR RARLRHAFHA ALRAAASGFP PDTVAFNALL AALSRAERFN ELWAARAAMS
201: RAGVRPNAHT FNILVAALCR GEDAERVQGF LEELEEQGFE PDVVTYNTLL VGYCRRGRLQ DALHLFDVMP PRGVEPDLVS HTVLMDGLCK AGRLSDARRM
301: FDRMVHSGVS PDAVAYSVLI AGYCNECRVK EARLLLMEMV GNGLSPEGFA LKSVIESHLK IGKLLTCLNM VSPLRKYGVA IPLESYNCLI GALCEEMRPH
401: AARGLFQWMI EDGHSPSLEM YNMVVDCYCQ CGSVDEALDI KVEMSSRGVK PDFDTYRTLV TCLCSVGRSS DGKSVMAEMI ESGLQPNESI CAALVCGFCK
501: EGSLNKAELI LKAFVLDLQV CCNKSYNTLM RAYCMTRSTT ESLELQNRML ELGFVPSSET CRSLVYGLSR SIA
101: TTRFFSHALD ALSHLLRLHP THDALPTLLL SYQTAPHPSL PSLLVKALLR RARLRHAFHA ALRAAASGFP PDTVAFNALL AALSRAERFN ELWAARAAMS
201: RAGVRPNAHT FNILVAALCR GEDAERVQGF LEELEEQGFE PDVVTYNTLL VGYCRRGRLQ DALHLFDVMP PRGVEPDLVS HTVLMDGLCK AGRLSDARRM
301: FDRMVHSGVS PDAVAYSVLI AGYCNECRVK EARLLLMEMV GNGLSPEGFA LKSVIESHLK IGKLLTCLNM VSPLRKYGVA IPLESYNCLI GALCEEMRPH
401: AARGLFQWMI EDGHSPSLEM YNMVVDCYCQ CGSVDEALDI KVEMSSRGVK PDFDTYRTLV TCLCSVGRSS DGKSVMAEMI ESGLQPNESI CAALVCGFCK
501: EGSLNKAELI LKAFVLDLQV CCNKSYNTLM RAYCMTRSTT ESLELQNRML ELGFVPSSET CRSLVYGLSR SIA
001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
Arabidopsis Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.