CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009391_P001	Maize	cytosol	92.5	92.5
Os01t0546700-00	Rice	cytosol	79.76	76.68
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	76.27	76.27
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	76.09	76.09
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	75.22	75.22
HORVU5Hr1G009510.3	Barley	cytosol	76.61	74.41
GSMUA_Achr5P09880_001	Banana	mitochondrion	47.82	41.02
KXG31660	Sorghum	mitochondrion	16.06	26.9
OQU81794	Sorghum	mitochondrion, peroxisome	16.06	22.83
OQU83816	Sorghum	mitochondrion	17.63	22.75
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	22.69	21.67
EES10956	Sorghum	mitochondrion	22.34	20.85
OQU87837	Sorghum	plastid	14.66	20.49
OQU75844	Sorghum	cytosol	18.67	19.42
EER99880	Sorghum	cytosol	15.88	19.04
OQU90004	Sorghum	cytosol	15.01	18.11
EER96725	Sorghum	mitochondrion, plastid	19.2	17.27
KXG40115	Sorghum	cytosol	12.39	16.44
EES09272	Sorghum	plastid	19.9	15.68
KXG22891	Sorghum	mitochondrion	15.88	15.56
KXG39937	Sorghum	cytosol, plastid	20.77	14.99
OQU78719	Sorghum	cytosol	19.72	14.79

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5XMY1	EnsemblPlants:EES00885	ProteinID:EES00885	ProteinID:EES00885.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	ProteinID:OQU86979.1	ProteinID:OQU86980.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF657	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3003G184300	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00081AE731	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:49049840..49053036

Molecular Weight (calculated)

62857.8 Da

IEP (calculated)

7.475

GRAVY (calculated)

0.112

Length

573 amino acids

Sequence
(BLAST)

001: MSKAVSRIPS STLTSLLPRA LNPHVAVVDL VATHLTAVTD DAEPVDLTRL LPYLGHDELT AVVLRAGHSH PLPTLRFLLA LPPPLQPSPP HLAFLAHSLA
101: SSRLFSHALG ALSHLIRLHP RHDALPTLLV ASATAPHPSL PGLLVKALLR HARLRDAFRS ALRAAAAGAP PDAAAFNSLL AALSRAGRFD ELWAARGAMV
201: RAGVRPDART FNILVAALCR GEDAERAQGF LEELEEQGFE PDVVTYNTLL AGYCRKGRLQ DALHLFGVMP YRRVPPDLVS HTILMDGLCK AWRLNEARRM
301: FDRMVQGGLC PDAVAYSVLI TGYCNEGQLK EARSLLMEMA GSGLLDIAFA LRVVIEGHVK FGKLLTCLNM VAPLRKYGII IPSQSYSCLI SALCEDMRPN
401: AARGLLQWMI EDGHSPSLQV YNMIVDCFCR CDNPKEALDV KVEMTTREVK PNYDTYQALI TCLCRLGKSL AGQSIMVEMI ESDFHPNEAI CAALVCGFCK
501: EGDLDRGELI VKSFALDFQI RCNESFNALM RTYCETRSTA ESLALQDRML ELGFVPNRET CRSIIYGLSR SPG

Best Arabidopsis Sequence Match ( AT5G40400.1 )
(BLAST)

001: MKNLVSNLRF FSSYSSSIVP RCSNIPKPIL NPLYNLLPQS QNPSKIVDVI CSTLNHSDYS VLLPNLRDEV KSLIPHLGYP EISRVLLRFQ SDASRAITFF
101: KWVKFDLGKR PNVGNYCLLL HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG LVEEGFRVFR EVLDSGFSVS
201: VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
301: RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV
401: ELRRLKVDIP FEVCDFLIVS LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL DAKTYRALIG CLCRIGRNRE
501: AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
601: PSLPNHLPEN

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.