CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023302_P001	Maize	mitochondrion	78.63	65.71
TraesCS7D01G362900.1	Wheat	mitochondrion	63.76	60.26
TraesCS7B01G267600.1	Wheat	mitochondrion	61.88	57.46
Os06t0565000-00	Rice	mitochondrion	66.32	55.91
TraesCS7A01G360200.1	Wheat	mitochondrion	66.32	55.43
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	59.66	50.51
GSMUA_Achr1P06500_001	Banana	cytosol	35.21	40.39
VIT_01s0010g01780.t01	Wine grape	cytosol	29.91	31.47
CDY17611	Canola	cytosol	28.89	28.5
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	33.68	25.89
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	33.68	25.89
CDY03072	Canola	mitochondrion	32.31	25.68
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	32.99	25.43
AT2G02150.1	Thale cress	mitochondrion, plastid	32.99	25.36
KRH42458	Soybean	plastid	32.48	25.3
Bra024831.1-P	Field mustard	mitochondrion	31.28	25.0
KRH58559	Soybean	plastid	22.91	22.87
OQU83816	Sorghum	mitochondrion	16.58	21.85
OQU81794	Sorghum	mitochondrion, peroxisome	13.85	20.1
KXG31660	Sorghum	mitochondrion	11.62	19.88
EER99880	Sorghum	cytosol	15.56	19.04
OQU90004	Sorghum	cytosol	15.21	18.74
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	19.15	18.67
EES10956	Sorghum	mitochondrion	19.49	18.57
OQU75844	Sorghum	cytosol	17.27	18.33
EES09272	Sorghum	plastid	22.22	17.88
KXG40115	Sorghum	cytosol	12.82	17.36
OQU87837	Sorghum	plastid	11.97	17.07
OQU78719	Sorghum	cytosol	20.85	15.97
EES00885	Sorghum	cytosol, mitochondrion	15.56	15.88
EER96725	Sorghum	mitochondrion, plastid	17.27	15.86
KXG39937	Sorghum	cytosol, plastid	21.37	15.74

Protein Annotations

EnsemblPlants:KXG22891	EnsemblPlantsGene:SORBI_3008G022701	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:KXG22891	ProteinID:KXG22891.2	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000B8BA6EA	UniProt:A0A1B6PB74	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:1991064..1996668

Molecular Weight (calculated)

64789.0 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.003

Length

585 amino acids

Sequence
(BLAST)

001: MLSLPLRRRH LLLRLCARRN PTFLRLSIAA SAAALSTAPT VASAAAATPI SDRLRVLRSL HAVAPDHLLS HPLPSSAHVC LAAHLAARAR LFAHSRRLLS
101: RLLGAGHRPH LAASLVDLLH RAALALGPRR SALPSVVDTL LSLLADHGLL DDAVRALARV RQLRVPPNTR TCNHILLRLA RNRQGGLVRR LFDLLPVPNV
201: FTFNIVIDFL CKEGELVEAR ALFVRMKAMG CSPDVVTYNS LIDGYGKCGD LEEVEQLVSE MRKSGCAADV VTYNALINCF SKFGRMEKAY SYFGEMKRQG
301: VVANVVTFST FVDAFCKEGL VQEAMKLFAQ MRVRGMMPNE FTYTSLVDGT CKAGRLDDAI VLLDEMVHQG LVPNVVTYTV MVDGLCKEGK VAEADNVLSL
401: MERGGVKANE LLYTTLIHGH FMNNNIVYTS LIDGYMKQAN LQDAFALKTK MIESGLQLDL YCYTCFISGF CNMNMMQEAR GELSVLGAHG KQHLENGSAM
501: NTSCSRYQLK DMSWRSKDPA VNGKENHGQE AVHEENTKSC DHKYGSYCLC FAEKLEKMEH TIERAESCEV GFPNVEWKLR QLVAT

Best Arabidopsis Sequence Match ( AT2G02150.2 )
(BLAST)

001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.