Factsheet for VIT_01s0010g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P06500_001	Banana	cytosol	53.6	58.43
CDY17611	Canola	cytosol	59.35	55.65
KRH42458	Soybean	plastid	65.65	48.6
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	62.77	45.98
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	62.77	45.86
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	62.77	45.86
Bra024831.1-P	Field mustard	mitochondrion	59.53	45.22
CDY03072	Canola	mitochondrion	59.53	44.97
AT2G02150.1	Thale cress	mitochondrion, plastid	61.15	44.68
KRH58559	Soybean	plastid	42.45	40.27
Os06t0565000-00	Rice	mitochondrion	50.0	40.06
TraesCS7A01G360200.1	Wheat	mitochondrion	50.0	39.71
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	49.1	39.51
TraesCS7B01G267600.1	Wheat	mitochondrion	44.24	39.05
Zm00001d023302_P001	Maize	mitochondrion	48.92	38.86
TraesCS7D01G362900.1	Wheat	mitochondrion	42.81	38.45
KXG22891	Sorghum	mitochondrion	31.47	29.91
VIT_17s0000g06480.t01	Wine grape	cytosol	14.39	29.41
VIT_13s0019g03690.t01	Wine grape	cytosol	24.1	27.46
VIT_06s0009g03510.t01	Wine grape	mitochondrion	29.86	27.26
VIT_14s0060g01220.t01	Wine grape	mitochondrion	27.34	24.96
VIT_08s0040g01530.t01	Wine grape	cytosol	27.7	24.84
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	33.27	24.73
VIT_14s0006g00170.t01	Wine grape	mitochondrion	24.82	23.31
VIT_01s0011g04390.t01	Wine grape	plastid	29.86	23.12
VIT_06s0004g04770.t01	Wine grape	plastid	23.38	23.09
VIT_12s0055g00970.t01	Wine grape	plastid	25.54	22.4
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	30.4	22.18
VIT_01s0011g01910.t01	Wine grape	mitochondrion	27.7	21.75
VIT_14s0083g00550.t01	Wine grape	cytosol	22.84	21.53
VIT_17s0000g03060.t01	Wine grape	plastid	23.38	19.7
VIT_12s0057g00740.t01	Wine grape	mitochondrion	18.53	19.43

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100241074	wikigene:100241074	MapMan:35.1	ProteinID:CCB51207	ProteinID:CCB51207.1
UniProt:F6HG14	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100241074
wikigene:LOC100241074	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF329	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109619
ArrayExpress:VIT_01s0010g01780	EnsemblPlantsGene:VIT_01s0010g01780	EnsemblPlants:VIT_01s0010g01780.t01	RefSeq:XP_002273398	RefSeq:XP_002273398.2	SEG:seg

Description

No Description!

Coordinates

chr1:+:18206450..18208458

Molecular Weight (calculated)

62378.5 Da

IEP (calculated)

5.089

GRAVY (calculated)

-0.012

Length

556 amino acids

Sequence
(BLAST)

001: MLEEASECFL KMRKFRVFPK PRSCNALLHR LSKVGRGDLS RKFFKDMGAA GIKRSVFTYN IMIDYLCKEG DLEMARSLFT QMKEAGFTPD IVTYNSLIDG
101: HGKLGLLDEC ICIFEQMKDA DCDPDVITYN ALINCFCKFE RMPKAFEFLH EMKANGLKPN VVTYSTFIDA FCKEGMLQEA IKFFVDMRRV ALTPNEFTYT
201: SLIDANCKAG NLAEALKLVE EILQAGIKLN VVTYTALLDG LCEEGRMKEA EEVFRAMLNA GVAPNQETYT ALVHGFIKAK EMEYAKDILK EMKEKCIKPD
301: LLLYGTILWG LCNESRLEEA KLLIGEIKES GINTNAVIYT TLMDAYFKSG QATEALTLLE EMLDLGLIAT EVTYCALIDG LCKSGLVQEA MHHFGRMSEI
401: GLQPNVAVYT ALVDGLCKNN CFEVAKKLFD EMLDKGMMPD KIAYTALIDG NMKHGNLQEA LNLRDRMIEI GMELDLHAYT ALIWGLSHSG QVQKARNLLD
501: EMIGKGVLPD EVVYMCLIKK YYALGKVDEA LELQNEMAKR GMITGLSDHA VPSVQT

Best Arabidopsis Sequence Match ( AT2G02150.2 )
(BLAST)

001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.