Factsheet for VIT_12s0057g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015722	Potato	cytosol	62.26	62.26
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	62.08	62.08
AT4G26680.1	Thale cress	mitochondrion	58.87	59.88
KRH44246	Soybean	cytosol	55.28	58.72
GSMUA_Achr1P12600_001	Banana	extracellular	36.42	55.3
CDX94295	Canola	cytosol	18.3	54.8
CDX94298	Canola	mitochondrion	57.92	53.95
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	18.3	44.29
HORVU1Hr1G093590.2	Barley	cytosol	19.06	42.44
Os10t0363500-00	Rice	endoplasmic reticulum	39.25	40.62
TraesCS2B01G343000.1	Wheat	cytosol, plastid	38.11	40.24
TraesCS2D01G324100.1	Wheat	plastid	37.74	39.84
HORVU2Hr1G080360.2	Barley	mitochondrion	38.11	39.45
Zm00001d030479_P001	Maize	plastid	36.98	38.89
TraesCS2A01G339000.1	Wheat	cytosol	39.25	37.89
VIT_14s0006g00170.t01	Wine grape	mitochondrion	27.36	24.49
VIT_14s0083g00550.t01	Wine grape	cytosol	26.6	23.9
Bra026410.1-P	Field mustard	mitochondrion	59.06	23.73
CDX89313	Canola	mitochondrion	59.06	23.13
VIT_06s0004g04770.t01	Wine grape	plastid	23.96	22.56
VIT_12s0055g00970.t01	Wine grape	plastid	26.23	21.92
VIT_14s0060g01220.t01	Wine grape	mitochondrion	24.91	21.67
VIT_17s0000g03060.t01	Wine grape	plastid	26.42	21.21
VIT_08s0040g01530.t01	Wine grape	cytosol	23.96	20.48
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	28.3	19.68
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	26.98	19.12
VIT_06s0009g03510.t01	Wine grape	mitochondrion	21.89	19.05
VIT_01s0010g01780.t01	Wine grape	cytosol	19.43	18.53
VIT_01s0011g04390.t01	Wine grape	plastid	22.45	16.57
VIT_01s0011g01910.t01	Wine grape	mitochondrion	21.32	15.96
VIT_13s0019g03690.t01	Wine grape	cytosol	12.83	13.93
VIT_17s0000g06480.t01	Wine grape	cytosol	3.4	6.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100251121	wikigene:100251121	EntrezGene:104877359	MapMan:35.1	ProteinID:CCB51727
ProteinID:CCB51727.1	UniProt:F6HHN1	EMBL:FN595759	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0090305
GO:GO:0090617	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100251121	wikigene:LOC100251121	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF415
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002108DA1	ArrayExpress:VIT_12s0057g00740	EnsemblPlantsGene:VIT_12s0057g00740
EnsemblPlants:VIT_12s0057g00740.t01	RefSeq:XP_002269867	RefSeq:XP_002269867.1	RefSeq:XP_010657454.1	:	:

Description

No Description!

Coordinates

chr12:+:9349300..9350912

Molecular Weight (calculated)

60306.2 Da

IEP (calculated)

8.900

GRAVY (calculated)

-0.288

Length

530 amino acids

Sequence
(BLAST)

001: MISIPFRGFS TLLNGAAKTP NYMRSWNPIP VPHRTIPEPR GQDLDFVNVA HSHLINSDWA KLNSMSTGLT PYRMKHIMLK IKKDHVLSFE FFNWVKAQNP
101: NCQTLETYSI ILHILTKNHK FKSAESVLKG ILGSGSIDHP SKLFEAILYS YRICDSSPCV FDSLFKTYAQ MKKLRNAIDV FCQMKDYGFL PRVESCNAYI
201: SASISLQRGD IALTFYREMQ RYRISPNVYT LNMVMCAFCK WGKLEKAIEV FKRMETMGFS PTITSYNTLI AGYCNKGLLN SGMKLKILME KNGVRPDDVT
301: FNTLINGFCR GGKLHEANKI FSEMKANDVV PNTITYNTLI NGYSQVGNSE MGGRLHDEML RNGIKADILT YNALILGLCM EGRTKKAAYL VKELDRENLV
401: PNSSTFSALI TGQCVRKNSE RAFQLYKSMI RSGCHPNYHT FKMLISTFCK NEDFDGAVEV VREMSERSIA PDSDTLSELC RGLWLSGKEE LALKLCKEME
501: MKHLMPEGFD KSKTINFRAE SEEKENGENF

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.