Factsheet for VIT_01s0011g01910.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51888	Canola	cytosol, mitochondrion, plastid	46.89	67.21
KRH40170	Soybean	mitochondrion	65.4	66.81
Bra013432.1-P	Field mustard	cytosol	46.61	66.67
CDX78962	Canola	cytosol	46.61	66.67
AT4G19890.1	Thale cress	plastid	62.01	62.62
PGSC0003DMT400026741	Potato	mitochondrion	62.85	62.15
Solyc02g068890.2.1	Tomato	mitochondrion	62.57	61.87
GSMUA_Achr1P12220_001	Banana	mitochondrion	54.38	55.32
Zm00001d048880_P001	Maize	mitochondrion	48.45	50.74
Os11t0607100-01	Rice	mitochondrion	47.88	50.52
TraesCS7D01G134400.2	Wheat	mitochondrion	47.46	50.15
TraesCS7A01G134800.1	Wheat	mitochondrion	47.46	50.0
TraesCS7B01G036200.1	Wheat	mitochondrion	47.18	50.0
OQU83816	Sorghum	mitochondrion	30.93	49.32
HORVU7Hr1G028150.1	Barley	mitochondrion	34.75	48.71
VIT_06s0004g04770.t01	Wine grape	plastid	22.03	27.71
VIT_01s0010g01780.t01	Wine grape	cytosol	21.75	27.7
VIT_13s0019g03690.t01	Wine grape	cytosol	18.5	26.84
VIT_08s0040g01530.t01	Wine grape	cytosol	21.89	25.0
VIT_14s0006g00170.t01	Wine grape	mitochondrion	20.9	25.0
VIT_14s0060g01220.t01	Wine grape	mitochondrion	21.47	24.96
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	26.69	24.8
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	25.99	24.6
VIT_06s0009g03510.t01	Wine grape	mitochondrion	20.9	24.3
VIT_12s0055g00970.t01	Wine grape	plastid	20.9	23.34
VIT_14s0083g00550.t01	Wine grape	cytosol	19.21	23.05
VIT_17s0000g06480.t01	Wine grape	cytosol	8.76	22.79
VIT_01s0011g04390.t01	Wine grape	plastid	22.32	22.01
VIT_12s0057g00740.t01	Wine grape	mitochondrion	15.96	21.32
VIT_17s0000g03060.t01	Wine grape	plastid	18.93	20.3

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100854972	wikigene:100854972	MapMan:35.1	EMBL:AM466568	ProteinID:CAN61637
ProteinID:CAN61637.1	ProteinID:CCB51002	ProteinID:CCB51002.1	UniProt:F6HFS1	EMBL:FN595752	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100854972	wikigene:LOC100854972	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C773E	ArrayExpress:VIT_01s0011g01910	EnsemblPlantsGene:VIT_01s0011g01910	EnsemblPlants:VIT_01s0011g01910.t01
RefSeq:XP_003631192	RefSeq:XP_003631192.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:1646100..1648239

Molecular Weight (calculated)

79873.5 Da

IEP (calculated)

8.297

GRAVY (calculated)

-0.052

Length

708 amino acids

Sequence
(BLAST)

001: MVLRLLLHRF HVLPQKLPAS SILSSVFLSQ LHPTFSLRPH CYIHDEPSTS SSSQSQSHSQ SVVRTICSLV CQSYYQQTHV RFTPPKLHLP LDSESLTHDQ
101: AITVVASLAD EAGSMVALSF LYWAIGFPKF RHFMRLYIVS ATALIGNKNL ERANEVMQCM VMNFAENGKL KEAVNMVVEM QNQGLVPSTQ TLNCVLDVAV
201: GMGLVEIAEN MFVEMCQRGV SPDCVSFKLM VVACCNMGRV LEAERWLNAM VERGFIVDNA TCTLIIDAFC QKGYVNRVVG YFWKMVEMGL APNVINFTAL
301: INGLCKQGSI KQAFELLEEM VRRGWKPNVY THTTLIDGLC KKGWTEKAFR LFLKLVRSDG YKPNVHTYTA MINGYCKEDK LNRAEMLLSR MQEQGLVPNT
401: NTYTTLIDGH CKVGNFVRAY ELMDLMGKEG FSPNIYTYNA IIDGLCKKGS LDEAYRLLNK VSVHGLQADG VTYTILMSVH CRQADTNRSL VFFNKMLKVG
501: FTPDIHSYTT LISTFCRQKQ MKESERLFEE AVSLGLIPTK KTYTSMICGY CRYGNTSLAV KLFQRMSNHG CAPDSITYGA LISGLCKESK LDDARNLYDA
601: MMDKGLSPCE VTRLTLAYEY CKKDDSSTAI NVLDRLEKRQ WIRTVNTLVR KLCSEGKLDM AALFFHKLLD KEPNVNRVTL LGFMNKCYES NKYGLVSELS
701: ERICEGIG

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.