CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013432.1-P	Field mustard	cytosol	99.8	99.8
CDY51888	Canola	cytosol, mitochondrion, plastid	97.17	97.37
AT4G19890.1	Thale cress	plastid	92.12	65.05
VIT_01s0011g01910.t01	Wine grape	mitochondrion	66.67	46.61
KRH40170	Soybean	mitochondrion	65.25	46.61
Solyc02g068890.2.1	Tomato	mitochondrion	61.82	42.74
PGSC0003DMT400026741	Potato	mitochondrion	61.41	42.46
GSMUA_Achr1P12220_001	Banana	mitochondrion	56.97	40.52
Os11t0607100-01	Rice	mitochondrion	54.34	40.09
TraesCS7D01G134400.2	Wheat	mitochondrion	53.54	39.55
Zm00001d048880_P001	Maize	mitochondrion	53.94	39.5
TraesCS7B01G036200.1	Wheat	mitochondrion	53.13	39.37
TraesCS7A01G134800.1	Wheat	mitochondrion	53.33	39.29
HORVU7Hr1G028150.1	Barley	mitochondrion	36.77	36.04
OQU83816	Sorghum	mitochondrion	32.32	36.04
CDY10136	Canola	cytosol	18.38	24.86
CDY21405	Canola	cytosol	20.2	23.64
CDY17611	Canola	cytosol	27.88	23.27
CDX86757	Canola	endoplasmic reticulum, extracellular	26.26	22.61
CDY57780	Canola	endoplasmic reticulum	26.26	22.61
CDX94295	Canola	cytosol	8.08	22.6
CDY04764	Canola	cytosol	15.35	21.47
CDY04100	Canola	plastid	19.8	21.35
CDY17453	Canola	mitochondrion	19.8	21.35
CDY30265	Canola	mitochondrion	28.89	19.59
CDX79463	Canola	plastid	24.24	19.45
CDY04754	Canola	cytosol	9.49	19.42
CDX84733	Canola	plastid	24.04	19.38
CDX74435	Canola	mitochondrion	28.48	18.93
CDY31404	Canola	cytosol	28.08	18.76
CDY03072	Canola	mitochondrion	27.68	18.61
CDX71311	Canola	cytosol	25.25	17.88
CDY47261	Canola	plastid	25.86	17.56
CDX93473	Canola	mitochondrion	21.41	17.32
CDX94941	Canola	cytosol, plastid	21.41	17.24
CDX87212	Canola	plastid	22.22	17.16
CDX71231	Canola	mitochondrion	21.82	17.12
CDY36644	Canola	mitochondrion	21.82	17.06
CDY67116	Canola	cytosol	20.2	16.86
CDX74507	Canola	cytosol	19.8	16.53
CDY39141	Canola	mitochondrion	22.22	15.9
CDY11211	Canola	mitochondrion	23.23	15.52
CDX82665	Canola	mitochondrion, plastid	21.62	15.44
CDX93490	Canola	mitochondrion	18.38	15.17
CDX80791	Canola	mitochondrion	17.98	14.81
CDX94959	Canola	mitochondrion	17.98	14.64
CDY50117	Canola	plastid	17.58	13.96
CDX94298	Canola	mitochondrion	15.76	13.71
CDY04753	Canola	mitochondrion, plastid	11.52	13.7
CDY49798	Canola	mitochondrion	17.78	13.56
CDY42586	Canola	plastid	16.97	13.55
CDX89313	Canola	mitochondrion	18.59	6.8

Protein Annotations

EnsemblPlants:CDX78962	EnsemblPlantsGene:GSBRNA2T00131466001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX78962	ProteinID:CDX78962.1	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0004EF0850	MapMan:35.1	:	:	:

Description

BnaA01g10290D

Coordinates

chrLK031816:-:1095815..1097302

Molecular Weight (calculated)

55857.1 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.187

Length

495 amino acids

Sequence
(BLAST)

001: MSVRGVRPDS NSFKLMVIGC FRDGKIQEAD RWLNGMIQRG FVPDNATCTL ILSALCENGL VNRAIWYFRK MVDLGLKPNL INFTALIDGL CKKGSIKQGF
101: EMLEEMVGVG WKPNVYTHTA LIDGLCKRGW TERAFRLFLK LVRSDCYKPN VHTYTSMIGG YCKEDKLNRA EMLFSRMKEQ GLFPNVNTYT TLIDGHCKAG
201: NFDRAYELMN LMGDEGFRPN IYTYNAVVDS LCKKSRASEA YELLNKAFSC GLEADGVTYT ILIQEQCKQS DIKQALAFFC RMNKTGFEAD MRLNNILIAA
301: FCRQKKMKES EKLFGYVVSL GLVPTKETYT SMISGYCKEG DIDLALKYFN NMKRHGCVPD SFTYGSLISG LCKKSMVDQA CKLYEAMIDK GLSPSEVTRV
401: TLAYEYCKRN DSANAMMLLE PLDKRLWIRT VRTLVRKLCS EKKVGVAALF YQKLLEKDGS SLDRVTLAAF TTACSESGKN NLVTDLTERV SRGVG

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.