CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11211	Canola	mitochondrion	82.36	66.8
AT5G01110.2	Thale cress	cytosol, plastid	75.37	59.84
VIT_06s0009g03510.t01	Wine grape	mitochondrion	47.75	47.13
KRH14574	Soybean	plastid	48.75	45.78
PGSC0003DMT400024895	Potato	cytosol	32.45	42.58
GSMUA_AchrUn_...	Banana	mitochondrion	39.6	41.39
PGSC0003DMT400003372	Potato	mitochondrion	47.09	38.77
TraesCS4A01G023000.1	Wheat	plastid	37.1	37.99
TraesCS4B01G280500.1	Wheat	plastid	36.94	37.82
KXG40115	Sorghum	cytosol	26.46	36.81
Zm00001d027800_P001	Maize	mitochondrion	38.44	35.59
TraesCS4D01G279000.1	Wheat	mitochondrion	37.94	35.13
HORVU4Hr1G074200.9	Barley	mitochondrion	37.77	33.28
Os03t0165100-00	Rice	cytosol, mitochondrion	38.27	31.59
CDY10136	Canola	cytosol	16.81	27.6
CDY04764	Canola	cytosol	12.81	21.75
CDY47261	Canola	plastid	25.62	21.12
CDX71231	Canola	mitochondrion	21.8	20.76
CDY04754	Canola	cytosol	8.32	20.66
CDY36644	Canola	mitochondrion	21.63	20.54
CDY17611	Canola	cytosol	19.8	20.07
CDY17453	Canola	mitochondrion	14.97	19.61
CDY49798	Canola	mitochondrion	20.97	19.41
CDY04100	Canola	plastid	14.81	19.39
CDX86757	Canola	endoplasmic reticulum, extracellular	18.3	19.13
CDY57780	Canola	endoplasmic reticulum	18.3	19.13
CDX93490	Canola	mitochondrion	18.97	19.0
CDX93473	Canola	mitochondrion	19.13	18.79
CDX94959	Canola	mitochondrion	18.8	18.59
CDX74507	Canola	cytosol	18.3	18.55
CDY67116	Canola	cytosol	18.3	18.55
CDY21405	Canola	cytosol	12.98	18.44
CDX94941	Canola	cytosol, plastid	18.8	18.37
CDY51888	Canola	cytosol, mitochondrion, plastid	14.97	18.22
CDX78962	Canola	cytosol	14.81	17.98
CDX87212	Canola	plastid	19.13	17.94
CDX84733	Canola	plastid	18.3	17.92
CDX79463	Canola	plastid	18.3	17.83
CDY30265	Canola	mitochondrion	21.63	17.81
CDX74435	Canola	mitochondrion	21.8	17.58
CDY31404	Canola	cytosol	21.63	17.54
CDY03072	Canola	mitochondrion	21.46	17.53
CDX71311	Canola	cytosol	19.47	16.74
CDX94295	Canola	cytosol	4.83	16.38
CDY50117	Canola	plastid	16.47	15.89
CDY04753	Canola	mitochondrion, plastid	10.48	15.14
CDY42586	Canola	plastid	15.47	15.0
CDX82665	Canola	mitochondrion, plastid	16.47	14.29
CDY39141	Canola	mitochondrion	16.31	14.16
CDX94298	Canola	mitochondrion	13.14	13.88
CDX89313	Canola	mitochondrion	18.14	8.06

Protein Annotations

EnsemblPlants:CDX80791	EnsemblPlantsGene:GSBRNA2T00134167001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF770
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX80791	ProteinID:CDX80791.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EE1080	MapMan:35.1	:

Description

BnaC03g00450D

Coordinates

chrLK031823:+:211270..214040

Molecular Weight (calculated)

68111.4 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.144

Length

601 amino acids

Sequence
(BLAST)

001: MFKLYKIQYL VKLGRQLNFH TNEFWSREKN SMGLPLSLDS LALGNRQPVE CRRRFAWSSV LVILNQANNN NNSATAASLR NHLIRLNPLS VVHPTIKFTP
101: SQFQAHSCLL RMIRRSGVSR AEVVSSLVST YSNCASNDSV FDLLIRTYVQ ARKLREAHEA FTLLRSKGYT VSIDALGWVE LAWGVYHDIS PSGINVYTLN
201: IMVNALCKDG QMDKVGSFLS QVQEKMGVYP DIVTYNTLIS AYSSKGFMEE AFELMDAMPS KGSVMSLFAR SGDLDKALVF FDFVKDAGLV PDNVIYTVLI
301: QGYCKKGMIS EAMDLRNEML RRGCCMDVVA YNTILHGLCK RKMLGDADKL FREMTERGLF PDSYTLTILI DGHCKLGNLQ NAMELFKKMK EKRIRLDVVT
401: YNTLLDGFGK VGDIDTAKEI WTDMVSREIL PTPVSYSIMV NALCSKGHLP EAFRGYCRSG NASDGESFLD KLVSEGFVPD IITYNTLIYG YVREENMSRA
501: FGLVKKMEEE KQGGGLLVPD VFTYNSILHG FCRQNQMKEA EAVLRKMIER GVNPDKSTYT ALINGFVSQD NLTEAFRFHD EIQYTFHYYS PLTFFRVKTE
601: K

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.