Factsheet for TraesCS4B01G280500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G023000.1	Wheat	plastid	97.61	97.61
TraesCS4D01G279000.1	Wheat	mitochondrion	98.3	88.91
HORVU4Hr1G074200.9	Barley	mitochondrion	97.27	83.72
KXG40115	Sorghum	cytosol	58.94	80.09
Zm00001d027800_P001	Maize	mitochondrion	80.75	73.04
Os03t0165100-00	Rice	cytosol, mitochondrion	84.84	68.41
GSMUA_AchrUn_...	Banana	mitochondrion	51.96	53.04
PGSC0003DMT400024895	Potato	cytosol	41.06	52.62
VIT_06s0009g03510.t01	Wine grape	mitochondrion	51.62	49.75
KRH14574	Soybean	plastid	51.79	47.5
PGSC0003DMT400003372	Potato	mitochondrion	50.77	40.82
Bra005695.1-P	Field mustard	mitochondrion	46.85	37.11
CDY11211	Canola	mitochondrion	46.85	37.11
CDX80791	Canola	mitochondrion	37.82	36.94
AT5G01110.2	Thale cress	cytosol, plastid	46.68	36.2
TraesCS2B01G355200.1	Wheat	plastid	25.55	28.63
TraesCS7B01G006900.1	Wheat	plastid	31.69	26.76
TraesCS2B01G133900.1	Wheat	plastid	23.0	25.09
TraesCS1B01G176600.2	Wheat	mitochondrion	25.04	25.04
TraesCS2B01G345200.1	Wheat	mitochondrion	24.36	23.48
TraesCS7B01G267600.1	Wheat	mitochondrion	25.04	23.33
TraesCS5B01G127400.1	Wheat	plastid	26.41	23.07
TraesCS2B01G273600.1	Wheat	plastid	28.62	22.52
TraesCS5B01G228400.1	Wheat	plastid	24.53	22.15
TraesCS6B01G408200.1	Wheat	plastid	22.32	21.94
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	19.76	20.24
TraesCS7B01G036200.1	Wheat	mitochondrion	21.98	19.31
TraesCS2B01G343000.1	Wheat	cytosol, plastid	15.16	17.73

Protein Annotations

EnsemblPlants:TraesCS4B01G280500.1	EnsemblPlantsGene:TraesCS4B01G280500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF648
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:563217400..563226697

Molecular Weight (calculated)

66314.4 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.219

Length

587 amino acids

Sequence
(BLAST)

001: MSRRRGASRL DIVSSLLASS PTPQPQVFDL LIRTYTQSRK PREAFEAFRL LLDRRVPIPA AASNALLAAL SRAGWPHLTA DAYRLVLSSD SEVNTYTLNI
101: MVHSYCKALQ FDKVDAVISE MEKRCVFPDV VTHNVMIDAR FRAGDVEAAM AVVDSMVSQG IKPGILTYNA VLKGLCRNGR WDKAREVFRA MGECGVAPDV
201: RSSNMLIGGF CRVKEADEAM KFYKEMRRRG VTPDIVSFSC LIGLFARRGK MDHAAAYLRE MREFGLMPDG VIYTMVIGGY CRAGSMLEAL RVRDEMVGRG
301: CLPDVVTYNT LLNGLCKERR LSDAEELLTE MRERGVPPDL CTFTTLIHGY CREGNIEKAL QLFETMLHER LTPDIVTYNT LIDGMCRQGD LGKANELWDD
401: MHSREIFPNH ITYSILIDSH CEKGQVDDAF GFLDEMINKG IVPNIMTYNS IIKGYCRSGN VLKGQQFLQK MRDAKVLPDL ITYNTLIHGY VKEEKMHEAF
501: NLLNMMENEK VQPDTVTYNM IINGFSVHGN MQEADWVYKK MGAKGIEPDR YTYMSMINGH VAAGNSKESF QLHDEMLQKG FAPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.