Factsheet for TraesCS6B01G408200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G355100.1	Wheat	plastid	96.65	96.65
TraesCS6A01G371200.1	Wheat	plastid	94.97	94.97
HORVU6Hr1G087430.7	Barley	cytosol	93.13	90.11
Os02t0827900-03	Rice	plastid	74.71	76.9
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	76.72	76.33
Zm00001d018528_P001	Maize	cytosol	73.87	75.9
VIT_14s0083g00550.t01	Wine grape	cytosol	45.39	45.93
CDY67116	Canola	cytosol	45.06	45.36
Bra028204.1-P	Field mustard	cytosol	44.72	45.03
CDX74507	Canola	cytosol	44.72	45.03
GSMUA_Achr1P17710_001	Banana	cytosol	45.39	44.35
AT5G38730.1	Thale cress	cytosol	43.05	43.12
Solyc04g050550.1.1	Tomato	cytosol	42.04	42.69
KRH20741	Soybean	cytosol	40.03	40.72
KRH13392	Soybean	cytosol	39.36	40.03
TraesCS2B01G355200.1	Wheat	plastid	22.11	25.19
TraesCS2B01G343000.1	Wheat	cytosol, plastid	20.94	24.9
TraesCS2B01G345200.1	Wheat	mitochondrion	24.29	23.81
TraesCS1B01G176600.2	Wheat	mitochondrion	22.95	23.34
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	21.78	22.69
TraesCS4B01G280500.1	Wheat	plastid	21.94	22.32
TraesCS2B01G133900.1	Wheat	plastid	19.93	22.12
TraesCS7B01G006900.1	Wheat	plastid	24.46	21.01
TraesCS2B01G273600.1	Wheat	plastid	24.46	19.57
TraesCS5B01G127400.1	Wheat	plastid	21.78	19.35
TraesCS7B01G036200.1	Wheat	mitochondrion	21.27	19.01
TraesCS7B01G267600.1	Wheat	mitochondrion	19.93	18.89
TraesCS5B01G228400.1	Wheat	plastid	18.43	16.92

Protein Annotations

EnsemblPlants:TraesCS6B01G408200.1	EnsemblPlantsGene:TraesCS6B01G408200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF279	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF17177	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6B:+:682557479..682559495

Molecular Weight (calculated)

64977.7 Da

IEP (calculated)

8.927

GRAVY (calculated)

-0.007

Length

597 amino acids

Sequence
(BLAST)

001: MPPHAGVDLP RAICAAVIKC SFSPHARLLA ADPSLLAAVL GRLSPLPSAA LAFFRALPPP HPLDATLALV RLLAAHPRHH PVARSLLRDL SLRHPLSSPL
101: VLPSLLAEPR VPSWLLLALA QGGRAGDAVR VFDHMRAAGL APDAHACTAL LTSLARARMT ATARRVFDEM GLAGVAMNTH VYNAMLHVCL KAGDAARAEA
201: LMTKMDAAGV PLDLFSFNTA IALYVRKGMQ YEAMCVRDRM ANDGVEADIV TWNTVIHGMC KEGRMKEAAQ LHRDMVAAGV EPDMVTYTTL VDGYCRAGDV
301: GEAMKLRGAM EGRGMLPGVA MYNAIIRKLC EDGKMKEVNG LLSEMDERKV QADHVTCNTL INSYSKKGDM PSACKVKKRM MESGLQLDQF TYKALIHGFS
401: KAKQLDEAKE ALFEMMGAGF SPNYSVFSWL VDGFYKKNCA DAVLLIPDEL LKRGLPPDKS VYRSLIRRLC KKGLVDLAQK VLHQMQGKGL EADCLVYATL
501: AYAQLSTGKL AAASDTLDEM SKRQLSVTPQ IYNCLCTSYG DEKETLNMFW VHAIERALIG KSVYKLMHQA RVKSSNPGVE NEGHAPVSRP SLPASAK

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.