CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018528_P001	Maize	cytosol	88.33	91.22
Os02t0827900-03	Rice	plastid	75.67	78.28
TraesCS6B01G408200.1	Wheat	plastid	76.33	76.72
TraesCS6A01G371200.1	Wheat	plastid	76.0	76.38
TraesCS6D01G355100.1	Wheat	plastid	75.83	76.21
HORVU6Hr1G087430.7	Barley	cytosol	75.33	73.26
GSMUA_Achr1P17710_001	Banana	cytosol	49.5	48.61
VIT_14s0083g00550.t01	Wine grape	cytosol	46.17	46.95
CDY67116	Canola	cytosol	43.83	44.35
Solyc04g050550.1.1	Tomato	cytosol	43.33	44.22
Bra028204.1-P	Field mustard	cytosol	43.67	44.18
CDX74507	Canola	cytosol	43.67	44.18
KRH20741	Soybean	cytosol	43.0	43.95
KRH13392	Soybean	cytosol	42.33	43.27
AT5G38730.1	Thale cress	cytosol	42.33	42.62
OQU81794	Sorghum	mitochondrion, peroxisome	19.33	28.78
OQU87837	Sorghum	plastid	19.0	27.8
EER99880	Sorghum	cytosol	20.0	25.1
KXG31660	Sorghum	mitochondrion	13.5	23.68
KXG40115	Sorghum	cytosol	16.67	23.15
EES00885	Sorghum	cytosol, mitochondrion	21.67	22.69
OQU83816	Sorghum	mitochondrion	16.5	22.3
EES10956	Sorghum	mitochondrion	22.67	22.15
OQU90004	Sorghum	cytosol	17.5	22.11
OQU75844	Sorghum	cytosol	19.5	21.23
EES09272	Sorghum	plastid	24.83	20.5
KXG39937	Sorghum	cytosol, plastid	26.5	20.03
OQU78719	Sorghum	cytosol	24.5	19.24
KXG22891	Sorghum	mitochondrion	18.67	19.15
EER96725	Sorghum	mitochondrion, plastid	17.5	16.48

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5XWN3	EnsemblPlants:EES07796	ProteinID:EES07796	ProteinID:EES07796.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G354000
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8615A	RefSeq:XP_002454820.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:68190504..68192506

Molecular Weight (calculated)

66248.9 Da

IEP (calculated)

9.092

GRAVY (calculated)

-0.047

Length

600 amino acids

Sequence
(BLAST)

001: MAASRAAVDL SRELCAAVIK STFRPNIHLA LLAAAPSLLT AVLNRLSPLP AAAFAFFRAL PPPHPLDATL ALLHLLAPHP RHHPAARALL RDLSLRHPLS
101: SPLLLPSLLA AADPRVPSWL VLVLAQSARP HDALRVFDQM RARGLAPDAH ACTALLTALA RARMTATARR VFDEMARAGL AVSTHVYNAM LHVCLKAGDA
201: ARAEALVTRM DAAGVPLDRF SYNTVIALYC KKGMRYEAMC VRDRMDKEGI RADTVTWNSL IHGLCKYGRV KEAAQLFTEM AAAQATPDNV TYTTLIDGYC
301: RAGNIEEAVK LRGEMEATGM LPGVATYNAI LRKLCEDGKM KEVNQLLNEM DERKVQADHV TCNTLINAYC KRGHMTSACK VKKKMMESGL QLNQFTYKAL
401: IHGFCKAKEL DEAKEAFFQM VDAGFSPNYS VFSWLVDGFC KKNNADAVLL IPDELMKRGL PPDKAVYRSL IRRLCRKGLV DQAQKVFDQM QSKGLVGDSL
501: VYATLAYTYL TEGKPVAASN TLDGMAKNQL YITPQIYNCL CTSYADEKET LNILWVRAIE RGLIKKSVYK LMHQARLEST NLAVETGGYD PFSRPDYLEG

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.