Factsheet for Bra028204.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74507	Canola	cytosol	100.0	100.0
AT5G38730.1	Thale cress	cytosol	87.02	86.58
VIT_14s0083g00550.t01	Wine grape	cytosol	58.35	58.64
KRH20741	Soybean	cytosol	55.82	56.39
KRH13392	Soybean	cytosol	55.31	55.88
Solyc04g050550.1.1	Tomato	cytosol	54.64	55.1
Zm00001d018528_P001	Maize	cytosol	44.86	45.78
GSMUA_Achr1P17710_001	Banana	cytosol	46.21	44.84
TraesCS6B01G408200.1	Wheat	plastid	45.03	44.72
TraesCS6A01G371200.1	Wheat	plastid	44.86	44.56
TraesCS6D01G355100.1	Wheat	plastid	44.69	44.39
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	44.18	43.67
Os02t0827900-03	Rice	plastid	42.33	43.28
HORVU6Hr1G087430.7	Barley	cytosol	44.18	42.46
Bra040883.1-P	Field mustard	endoplasmic reticulum	24.28	25.04
Bra020001.1-P	Field mustard	mitochondrion	24.45	24.17
Bra015229.1-P	Field mustard	mitochondrion	24.79	23.22
Bra015447.1-P	Field mustard	cytosol	17.03	23.17
Bra022891.1-P	Field mustard	plastid	23.78	22.96
Bra019985.1-P	Field mustard	cytosol	23.44	22.71
Bra025578.1-P	Field mustard	plastid	23.1	21.99
Bra017434.1-P	Field mustard	cytosol, plastid	20.07	21.36
Bra025651.1-P	Field mustard	mitochondrion	26.48	21.07
Bra005695.1-P	Field mustard	mitochondrion	24.96	19.97
Bra038853.1-P	Field mustard	mitochondrion	23.27	19.83
Bra013432.1-P	Field mustard	cytosol	16.53	19.8
Bra024831.1-P	Field mustard	mitochondrion	23.95	19.4
Bra035931.1-P	Field mustard	mitochondrion	20.74	19.01
Bra024554.1-P	Field mustard	cytosol	10.46	18.34
Bra024552.1-P	Field mustard	cytosol	6.07	14.29
Bra002000.1-P	Field mustard	cytosol	6.24	12.21
Bra026410.1-P	Field mustard	mitochondrion	20.4	9.17

Protein Annotations

EnsemblPlants:Bra028204.1	EnsemblPlants:Bra028204.1-P	EnsemblPlantsGene:Bra028204	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF279	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002544796	UniProt:M4EHD9	MapMan:35.1	:

Description

AT5G38730 (E=1e-290) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA04:+:6630935..6632716

Molecular Weight (calculated)

67367.0 Da

IEP (calculated)

8.703

GRAVY (calculated)

-0.148

Length

593 amino acids

Sequence
(BLAST)

001: MVNIASANRE ALIAQSICGT ILKGNWKNIL KHKLDSGLLT SSITTQVLSE LSSYGGPSLA LSFFTWSDSI PSCKHTLQSS WKMILILTKH NYFKTAHQLL
101: DKLSQRELLS SPLVLRSLLN GVSEDPEVLS HVFSWMIIYY AKSGMIRDSI EVFEQIRSCG LRPHLQACTV LLNSLVKERL TDSVWKVFKK MGKLGVVANI
201: HLYNVLVHAC SKSGDPERAE KLLSEMEERG VFPDLCTYNT LISVYCRKGM HYEALSVQDR MQRSGIGPDI VTYNSLIHGF CREGRMREAT RLFREIKGVV
301: TANHVTYTTL IDGYCRTNDI DEALRLREVM EARGFSPGVV TYNSILHKLC EDGRIREANR LLTEMSGKKI EPDNITCNTL INAYCKIGDM VSAVKVKKKM
401: VDSGLKLDMY SYKALIHGFC KALEMDNAKE ELFSMLEKGL SPGYSTYSWL VDGFYDQNKQ DEISKLPEEF EKRGLCPDVA LYRGLIRRIC KLEQVDHAKV
501: LLDSMEKKGL MGDSVIYTTM AYAYWRTGKV TEASALFDIM YNRRLMVNLK LYKSLSASYA GDNEVLIFFW SHVRDRSLIS KSILRDMNRS EVL

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.