Factsheet for Bra005695.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11211	Canola	mitochondrion	99.46	99.46
AT5G01110.2	Thale cress	cytosol, plastid	83.13	81.37
VIT_06s0009g03510.t01	Wine grape	mitochondrion	49.26	59.93
KRH14574	Soybean	plastid	50.2	58.12
PGSC0003DMT400024895	Potato	cytosol	34.01	55.02
GSMUA_AchrUn_...	Banana	mitochondrion	40.76	52.52
PGSC0003DMT400003372	Potato	mitochondrion	50.88	51.64
KXG40115	Sorghum	cytosol	28.21	48.38
TraesCS4A01G023000.1	Wheat	plastid	37.25	47.02
TraesCS4B01G280500.1	Wheat	plastid	37.11	46.85
Zm00001d027800_P001	Maize	mitochondrion	39.68	45.3
TraesCS4D01G279000.1	Wheat	mitochondrion	39.68	45.3
HORVU4Hr1G074200.9	Barley	mitochondrion	39.54	42.96
Os03t0165100-00	Rice	cytosol, mitochondrion	39.41	40.11
Bra015447.1-P	Field mustard	cytosol	18.35	31.19
Bra015229.1-P	Field mustard	mitochondrion	24.83	29.07
Bra019985.1-P	Field mustard	cytosol	22.13	26.8
Bra020001.1-P	Field mustard	mitochondrion	21.32	26.33
Bra002000.1-P	Field mustard	cytosol	10.66	26.07
Bra040883.1-P	Field mustard	endoplasmic reticulum	19.97	25.74
Bra024554.1-P	Field mustard	cytosol	11.61	25.44
Bra028204.1-P	Field mustard	cytosol	19.97	24.96
Bra017434.1-P	Field mustard	cytosol, plastid	18.76	24.96
Bra025651.1-P	Field mustard	mitochondrion	24.7	24.56
Bra024831.1-P	Field mustard	mitochondrion	24.16	24.45
Bra024552.1-P	Field mustard	cytosol	8.23	24.21
Bra022891.1-P	Field mustard	plastid	19.97	24.1
Bra035931.1-P	Field mustard	mitochondrion	20.92	23.96
Bra025578.1-P	Field mustard	plastid	19.7	23.43
Bra013432.1-P	Field mustard	cytosol	15.52	23.23
Bra038853.1-P	Field mustard	mitochondrion	19.03	20.26
Bra026410.1-P	Field mustard	mitochondrion	19.7	11.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra005695	EnsemblPlants:Bra005695.1	EnsemblPlants:Bra005695.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4CNA7	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253FA2F	SEG:seg

Description

AT5G01110 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA03:+:161077..163302

Molecular Weight (calculated)

83051.5 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.139

Length

741 amino acids

Sequence
(BLAST)

001: MAAHRLLPSR ILLFSRVKTP HTRLKPHKAL TTSSLAPAPA PESETPSSSC SDSDPYLVDK LCFSLTQGNN NNNNNAAASL RNHLTRLNPL SVVEVLYRCR
101: NDLTLAQRFI YQLGSHLPNF KHTSFSLSAM IHILVRSGRL SDAQSCLLRM VRRSGVSREE VVSSLASTYT NCASNDSVFD LLIRTYVQAR KLREAHEAFT
201: LLRSKGYTVS IDACNALIGS LVRLGWVELA WGVYHDISRS GINVYTLNIM VNALCKDGQI DKVGDFLSQV QEKMGVYPDI VTYNTLISAY SSKGFIEEAF
301: ELMDAMPSKG FTPGVYTYNT VINGLCKHRK YERAKEVFAE MLRSGLSPDA TTYRSLLMEA CKKGDAVEVE EIFSDMRCRD VVPDLVCFSS VMSLFARSGD
401: LDKALVYFNF LKGAGLVPDN VIYTVLIQGY CKKGMLSEAM DLRNEMLRRG CCMDVVAYNT ILHGLCKRKM LGDADKLFRE MTERGLFPDS YTLTILIDGH
501: CKLGNLQNAM ELFKKMKEKR IRLDVVTYNT LLDGFGKVGD IDTAKEIWTD MVSREILPTP VSYSIMVNAL CSKGHLSGAF RVWDEMMSKG VKPTVMICNS
601: MIKGYCRSGN ASDGESFLDK MVSEGFVPDI ITYNTLIYGY VREENMSRAF GLVKKMEGEK QGGGLVPDVF TYNSILHGFC RQNQMKEAEA VLRKMIERGV
701: DPDKSTYTAL INGFVSQDNL TEAFRFHDEM LQRGFSPDDQ F

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.