Factsheet for PGSC0003DMT400024895

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003372	Potato	mitochondrion	95.2	59.73
KXG40115	Sorghum	cytosol	49.78	52.78
VIT_06s0009g03510.t01	Wine grape	mitochondrion	65.28	49.1
KRH14574	Soybean	plastid	59.17	42.34
GSMUA_AchrUn_...	Banana	mitochondrion	52.62	41.91
TraesCS4A01G023000.1	Wheat	plastid	53.06	41.4
TraesCS4B01G280500.1	Wheat	plastid	52.62	41.06
TraesCS4D01G279000.1	Wheat	mitochondrion	52.84	37.29
Zm00001d027800_P001	Maize	mitochondrion	51.97	36.67
HORVU4Hr1G074200.9	Barley	mitochondrion	53.06	35.63
AT5G01110.2	Thale cress	cytosol, plastid	57.64	34.87
CDY11211	Canola	mitochondrion	55.46	34.28
Bra005695.1-P	Field mustard	mitochondrion	55.02	34.01
CDX80791	Canola	mitochondrion	42.58	32.45
Os03t0165100-00	Rice	cytosol, mitochondrion	51.31	32.28
PGSC0003DMT400027103	Potato	cytosol	23.14	25.92
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	31.0	23.24
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	31.0	23.24
PGSC0003DMT400066731	Potato	mitochondrion, plastid	30.35	22.49
PGSC0003DMT400034430	Potato	cytosol	22.49	21.46
PGSC0003DMT400066275	Potato	cytosol	15.07	21.23
PGSC0003DMT400078379	Potato	cytosol	31.0	20.52
PGSC0003DMT400058276	Potato	mitochondrion	33.19	20.21
PGSC0003DMT400066369	Potato	mitochondrion	33.84	20.21
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	30.79	18.53
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	30.79	18.53
PGSC0003DMT400058577	Potato	plastid	22.27	18.18
PGSC0003DMT400007278	Potato	mitochondrion	23.58	17.85
PGSC0003DMT400026741	Potato	mitochondrion	24.89	15.92
PGSC0003DMT400023499	Potato	plastid	19.0	13.83
PGSC0003DMT400015722	Potato	cytosol	14.19	12.26
PGSC0003DMT400040701	Potato	mitochondrion	13.97	11.64
PGSC0003DMT400027113	Potato	cytosol, plastid	25.33	11.49
PGSC0003DMT400027098	Potato	cytosol	14.41	10.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400024895	EnsemblPlantsGene:PGSC0003DMG402009622	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG402009622	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI0002969D57	UniProt:M1AKR9	MapMan:35.1	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402009622]

Coordinates

chr4:-:49167887..49172119

Molecular Weight (calculated)

52021.2 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.167

Length

458 amino acids

Sequence
(BLAST)

001: MVTYNTLINA YCHEGLLEEA YEMTNIMKAT GLRPCLLTYN SILNGLCKNG QYGRARELLV EMEESGLAPD TTSYNALLAE CCRAGNVLEA ESVFKEMLCR
101: AIIPDLVSYS SLIGLFSRTG RLDRSLAYYE HMKRKGLTPD NVVYTILIGG FCRNGSMKEA MKMRDEMLEQ SLVMDVVTYN TILNGLCKGK MLHEADELFN
201: EMLERDVNPD FYTFTMLING YCKFGNMEKA QTLFEAMLLR NLKPDVVTYN SLIDGFCKVG DMEKAFSLRD EMISVNISPN YITYSILING FCNKGRVTDA
301: LRLWDDMIIL GIKPTIVTCN SIIKGYCRSG DASRAAKFLN KMQSQGLFPD SITYNTLLDG LIREENMDKA LDLVNEMGKQ GLSPDVISYN TILDGFCKFG
401: RMQEANMLYR KMVERGINPD RYTYTSLING HVSQDNLKEA FRFHDEMLQR GFIPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.