Factsheet for PGSC0003DMT400066731

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109060.2.1	Tomato	mitochondrion	94.66	94.66
VIT_12s0055g00970.t01	Wine grape	plastid	63.59	61.99
KRH24548	Soybean	mitochondrion	58.74	58.27
GSMUA_Achr8P16100_001	Banana	cytosol	24.92	56.41
KRH29553	Soybean	mitochondrion	37.86	53.42
AT2G15630.1	Thale cress	mitochondrion	50.81	50.08
CDY36644	Canola	mitochondrion	51.29	50.08
Bra015229.1-P	Field mustard	mitochondrion	51.13	49.92
CDX71231	Canola	mitochondrion	50.65	49.6
OQU81794	Sorghum	mitochondrion, peroxisome	31.39	48.14
Os04t0477200-01	Rice	endoplasmic reticulum	33.82	45.93
HORVU2Hr1G082620.1	Barley	plastid	34.95	42.69
TraesCS2D01G336100.1	Wheat	plastid	36.08	42.56
Zm00001d003294_P001	Maize	plastid	35.76	42.18
TraesCS2B01G355200.1	Wheat	plastid	35.6	41.98
TraesCS2A01G326700.1	Wheat	plastid	35.6	41.98
PGSC0003DMT400024895	Potato	cytosol	22.49	30.35
PGSC0003DMT400034430	Potato	cytosol	22.65	29.17
PGSC0003DMT400058577	Potato	plastid	25.4	27.99
PGSC0003DMT400003372	Potato	mitochondrion	31.55	26.71
PGSC0003DMT400007278	Potato	mitochondrion	25.24	25.79
PGSC0003DMT400015722	Potato	cytosol	21.2	24.72
PGSC0003DMT400027103	Potato	cytosol	16.02	24.21
PGSC0003DMT400078379	Potato	cytosol	26.54	23.7
PGSC0003DMT400066369	Potato	mitochondrion	29.29	23.6
PGSC0003DMT400058276	Potato	mitochondrion	28.64	23.54
PGSC0003DMT400023499	Potato	plastid	23.62	23.21
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	27.83	22.6
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	27.83	22.6
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	22.17	22.42
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	22.17	22.42
PGSC0003DMT400026741	Potato	mitochondrion	23.95	20.67
PGSC0003DMT400040701	Potato	mitochondrion	17.8	20.0
PGSC0003DMT400066275	Potato	cytosol	9.39	17.85
PGSC0003DMT400027098	Potato	cytosol	15.21	15.21
PGSC0003DMT400027113	Potato	cytosol, plastid	24.11	14.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102595646	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CG31	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400025930	PGSC:PGSC0003DMG400025930	EnsemblPlants:PGSC0003DMT400066731	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF918	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294DAC5	RefSeq:XP_006346504.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025930]

Coordinates

chr1:-:85327922..85331395

Molecular Weight (calculated)

69529.1 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.084

Length

618 amino acids

Sequence
(BLAST)

001: MRSGEALRSL SLQRFSTLSL SKSTSPTIPI TAEVLRESVT SSQWHFIKHV TGELNPTLIS ATLPDLRSSP DRVLTFIENL SPNCLDISCY CLAISILSRL
101: PSPKQATHLL KQVISYRLAS HNEIFDGLVS AREKLEIKSS IVLDLLVRAY CELKKGEDAL KCFYLMKQKG ILPKVETCND LLSLFLKLNR THLAWIVYAE
201: MFRMKMSSTV CTFNIMINVL CREGKLKKAK EFIEHMQCSG VKPNLISYNT VIHGYCLRGD IEGANKILET MTAKGIEPDS YTFNSLVRGM VKEGREKEVS
301: SLVVKMKSFG LIPTAVTYNT LIDSCCSKGD LEKAFFYRDE MVKIGIVPSV STYNLLIHAL FLDGRMVETD DLLKDMLEKR VLPDGITYNI LINGYCRVGN
401: AKKAFKFYDE LLSRSLQPTI VTYTSLIKVL GKRKRMKEAD DLVVEILRKG ICPDLIMFNA LIDGHCANDN VERAFDTLSE MNKMNVQPDE VTYNTLMQGY
501: CKKGKVEEAC MLLEEMKGRE IKPDHITYNT LISGYSRRGN MDDAFRVRDD MLGAGFNPTL LTYNALIQGL CKKQEGVLAE ELLKEMVSKG ITPDDSTYLA
601: LIEGIGDVDS FLGRKDTS

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.