Factsheet for PGSC0003DMT400058276

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	66.09	66.44
KRG99196	Soybean	cytosol	44.02	62.69
KRH45820	Soybean	cytosol, mitochondrion, plastid	60.37	61.19
Bra015447.1-P	Field mustard	cytosol	33.38	57.57
CDY10136	Canola	cytosol	27.93	57.38
CDY47261	Canola	plastid	54.65	56.38
AT1G05670.3	Thale cress	mitochondrion	54.92	55.74
OQU90004	Sorghum	cytosol	32.85	52.0
GSMUA_Achr8P04810_001	Banana	mitochondrion	48.94	50.62
TraesCS2D01G229300.1	Wheat	mitochondrion	41.62	41.96
Os07t0513200-01	Rice	mitochondrion	41.49	41.38
TraesCS2B01G273600.1	Wheat	plastid	40.96	41.29
Zm00001d006478_P001	Maize	mitochondrion	40.56	40.94
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	41.36	40.44
HORVU2Hr1G046710.2	Barley	cytosol, plastid	41.62	40.44
PGSC0003DMT400024895	Potato	cytosol	20.21	33.19
PGSC0003DMT400034430	Potato	cytosol	19.81	31.04
PGSC0003DMT400007278	Potato	mitochondrion	23.4	29.09
PGSC0003DMT400066731	Potato	mitochondrion, plastid	23.54	28.64
PGSC0003DMT400003372	Potato	mitochondrion	27.79	28.63
PGSC0003DMT400078379	Potato	cytosol	25.27	27.46
PGSC0003DMT400027103	Potato	cytosol	14.89	27.38
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	26.46	26.15
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	26.46	26.15
PGSC0003DMT400015722	Potato	cytosol	18.35	26.04
PGSC0003DMT400066369	Potato	mitochondrion	26.46	25.95
PGSC0003DMT400058577	Potato	plastid	19.28	25.85
PGSC0003DMT400026741	Potato	mitochondrion	23.54	24.72
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	19.55	24.06
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	19.55	24.06
PGSC0003DMT400023499	Potato	plastid	18.22	21.78
PGSC0003DMT400066275	Potato	cytosol	8.64	20.0
PGSC0003DMT400040701	Potato	mitochondrion	14.1	19.27
PGSC0003DMT400027098	Potato	cytosol	13.83	16.83
PGSC0003DMT400027113	Potato	cytosol, plastid	20.08	14.95

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102589915	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1C2E4	PFAM:PF12854	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG401022625
PGSC:PGSC0003DMG401022625	EnsemblPlants:PGSC0003DMT400058276	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF949	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296D049	RefSeq:XP_015168807.1	RefSeq:XP_015168808.1
RefSeq:XP_015168809.1	RefSeq:XP_015168810.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG401022625]

Coordinates

chr5:-:6399850..6406751

Molecular Weight (calculated)

85932.9 Da

IEP (calculated)

7.588

GRAVY (calculated)

-0.062

Length

752 amino acids

Sequence
(BLAST)

001: MRRCSAFVFP YHCQVLSYHR YLGSVTKHMS FFSYSTNSAV EKLSCLTLTA VRPFPDYSPK KPFIRDSELV QHVSTSIKQR YSEHIRRVLK PFESKIKPDH
101: IVWVLMTIKN DYKLVIDFFD WWCQRRDPSI EVRCIIVHIA AAQKDARTVH RLIHDFWARP SVDVTVFFPQ FLEKLIYTYK DWGSNPFVFD IFFQVLVELG
201: SLDYGRKLFD KMLHYGLVLS VSSCNFFLSC LSHEIEGHKM MLKVFHEFSE VGVCWDNESH NIVIHSLCRI GKVKEAHNLL LQMELRGCMP DVVSYSTVIN
301: GYCAAGQLES VMKIIEEMQV KGLKPNAFTF NSIILLLSKR GKVHDAEKIL REMTSQGITP DNVVYTTLID GFCKTGNISA AYSLFNEMQS LNITPDLITY
401: TALISGLCHT GNIAEADKLL NYMLGRGLEP DEFIYTTLID GYCKAGEIKA AFSLHNKMVQ MQFVPNIVTY TTLVDGLCKL GELETANELL HEMCGKGLEL
501: NIYTYNSLVN GFCKAGDVNQ AVKLMEDMEA AGICPDAFTY TTLMDAYCKL GEMGKAHGLL RQMLLRGLQP TIVTFNVLMN GFCMSGMLEE GDKLLKWMLE
601: KGIIPNATTY NSLMKQYSVR NNMCMTSEIY KGMLGKGVVP NANTFNILIR GHCKARNMKE AWFLHKEMIK KGFTPTLETY HALIKGFLKR KKYSEAKEMF
701: EEMRRYGLLA DKELYSIFAD MNYEQGNFDL ALELCDEAVE KCLADKTDNR NA

Best Arabidopsis Sequence Match ( AT1G05670.3 )
(BLAST)

001: MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
101: YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
201: MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
301: WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
401: DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
501: LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
601: SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
701: KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N

Arabidopsis Description

Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A068FPW3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.