Factsheet for TraesCS2B01G273600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G229300.1	Wheat	mitochondrion	97.99	97.99
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	96.51	93.63
HORVU2Hr1G046710.2	Barley	cytosol, plastid	94.24	90.83
Os07t0513200-01	Rice	mitochondrion	79.49	78.65
OQU90004	Sorghum	cytosol	49.06	77.05
Zm00001d006478_P001	Maize	mitochondrion	75.87	75.97
GSMUA_Achr8P04810_001	Banana	mitochondrion	47.86	49.11
CDY10136	Canola	cytosol	23.99	48.91
KRG99196	Soybean	cytosol	34.18	48.3
Bra015447.1-P	Field mustard	cytosol	27.61	47.25
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	44.24	44.12
KRH45820	Soybean	cytosol, mitochondrion, plastid	42.76	42.99
PGSC0003DMT400058276	Potato	mitochondrion	41.29	40.96
AT1G05670.3	Thale cress	mitochondrion	39.95	40.22
CDY47261	Canola	plastid	38.47	39.37
TraesCS2B01G355200.1	Wheat	plastid	20.64	29.39
TraesCS4B01G280500.1	Wheat	plastid	22.52	28.62
TraesCS2B01G345200.1	Wheat	mitochondrion	22.79	27.91
TraesCS7B01G006900.1	Wheat	plastid	24.8	26.62
TraesCS5B01G127400.1	Wheat	plastid	23.73	26.34
TraesCS2B01G343000.1	Wheat	cytosol, plastid	17.43	25.9
TraesCS2B01G133900.1	Wheat	plastid	18.1	25.09
TraesCS1B01G176600.2	Wheat	mitochondrion	19.71	25.04
TraesCS6B01G408200.1	Wheat	plastid	19.57	24.46
TraesCS5B01G228400.1	Wheat	plastid	21.05	24.15
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	17.83	23.21
TraesCS7B01G267600.1	Wheat	mitochondrion	19.57	23.17
TraesCS7B01G036200.1	Wheat	mitochondrion	20.64	23.05

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF949	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS2B01G273600
EnsemblPlants:TraesCS2B01G273600.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:375133497..375135737

Molecular Weight (calculated)

82908.6 Da

IEP (calculated)

8.263

GRAVY (calculated)

-0.142

Length

746 amino acids

Sequence
(BLAST)

001: MLLRRTAAAA AQRSSWLPPW RTILPHVGPA RPYSATTSTS SPHRQRRSRC RTPQVTDGSL TTTAAPRPFP DYSPPRPDSP ADDALARRLA AALLASPSPG
101: SLPPLPFIPL LRPLHLLLAL PLLASHPNLT SLLVPLLLLF PSRPHPHPQL IQCFAIAAHL AVREPGTARA ILVRALRFPS PHRHFVEQFI FTYKAFSSDP
201: ASFDLLLLCL PSAQLLRRLR QYGLSPSPES CNAVLSRLPL DEAIALFREL PDKNVCSHNI LLKALLSAGR LKDARQHFDE MSSPPDVVTY GTMVHGYCDL
301: GELENAVKLL DEMAAKGLES NATVYTSVIA LLCNKGQVSD ALRVVEDMTM HGVVLDAVVF TTVMSGFCSK GDLAAARRLF EEMQKRGLAA DGVTYTALIN
401: GLCRAGELKE ADRVLQEMVD KGLDVDVVTY TALIDGYCKR GNMVEAFRVH NEMVRRRVAP NVVTYTALSD GLCKQGDVRA ANELLHEMCN KGLELNVYTY
501: NSLINGLCKF GNLEQATRIM TEMEAAGLRP DVYTYTTLID TLCKSGEFDR AHSMLQEMLD KGIKPSIATY NVLMNGFCMS GRVEGGKRLL EWMLEKNVRP
601: NVVTYNYLMK QYCIDKNMKS TTEIYKGMQS QEVAPNENTY NILIKGHCKA RNMKEALYFH HAMIEKGFRL TTSSYSALIR LLNKKKKFSE ARGLFDEMRK
701: EGLTAEPDVH SFYIDISFNE DNLESTITLC DELVEASHVN SKAGTN

Best Arabidopsis Sequence Match ( AT1G05670.3 )
(BLAST)

001: MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
101: YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
201: MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
301: WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
401: DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
501: LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
601: SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
701: KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N

Arabidopsis Description

Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A068FPW3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.