Factsheet for TraesCS1B01G176600.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160000.1	Wheat	mitochondrion	79.73	94.35
TraesCS1D01G157200.1	Wheat	mitochondrion	91.82	93.9
HORVU1Hr1G042440.2	Barley	mitochondrion	89.95	92.15
Os10t0484300-01	Rice	mitochondrion	75.13	76.3
KXG31660	Sorghum	mitochondrion	44.12	75.73
Zm00001d039548_P001	Maize	mitochondrion	56.73	73.35
GSMUA_Achr3P01360_001	Banana	mitochondrion	42.76	48.36
KRH29211	Soybean	cytosol	42.08	42.37
VIT_14s0060g01220.t01	Wine grape	mitochondrion	42.25	40.72
PGSC0003DMT400007278	Potato	mitochondrion	40.89	39.67
Solyc01g100450.1.1	Tomato	mitochondrion	40.72	39.5
Bra019985.1-P	Field mustard	cytosol	39.01	37.42
CDX93473	Canola	mitochondrion	38.84	37.25
CDX94941	Canola	cytosol, plastid	38.84	37.07
AT1G09820.1	Thale cress	mitochondrion, plastid	38.16	36.96
TraesCS2B01G133900.1	Wheat	plastid	24.87	27.14
TraesCS2B01G355200.1	Wheat	plastid	23.17	25.95
TraesCS4B01G280500.1	Wheat	plastid	25.04	25.04
TraesCS2B01G345200.1	Wheat	mitochondrion	25.72	24.79
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	23.85	24.43
TraesCS6B01G408200.1	Wheat	plastid	23.34	22.95
TraesCS2B01G343000.1	Wheat	cytosol, plastid	19.42	22.71
TraesCS7B01G006900.1	Wheat	plastid	26.75	22.59
TraesCS7B01G267600.1	Wheat	mitochondrion	23.0	21.43
TraesCS5B01G127400.1	Wheat	plastid	23.85	20.83
TraesCS5B01G228400.1	Wheat	plastid	22.15	20.0
TraesCS2B01G273600.1	Wheat	plastid	25.04	19.71
TraesCS7B01G036200.1	Wheat	mitochondrion	21.29	18.71

Protein Annotations

EnsemblPlants:TraesCS1B01G176600.2	EnsemblPlantsGene:TraesCS1B01G176600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:317846372..317849519

Molecular Weight (calculated)

64195.7 Da

IEP (calculated)

9.364

GRAVY (calculated)

0.014

Length

587 amino acids

Sequence
(BLAST)

001: MPLRTLLRHL AAGQFARLQA LTGAATAPAA HRVLHLLLRT APVPPLPDLV SLARWSRSHF RAPLPLQLHA LLLARLASHG LHPLLRSELH TLTAARLHSP
101: ASILRALPAS SPAAAPLIAD MLVLALARAS QPLAAYEAFL LVGDNHPRHR PSAFSVNSLL SALFAAGRVD LAERAFKAAL RRRVSPDLFT FNIVISGLCK
201: AGQLRKAGDV AKDIRAWGLT PSVATYNTLI DGYCKKGRVG RMYHIDALLK EMVEAGISPN VVTFNVLVTG YCQDSNTAAA VRVFEEMKQQ GIAPSMGTYN
301: ALVWGLCSEG KVEEGVKLVD EMQDLGLPPN VATLNSVLNG FCKKGIMVDA ENWVDGMAQW NVEPNVVTYN TLIDGYRRLG KMKDAAAVKE AMAGKGISPN
401: VRTYNCLIAG FDQSGDWRSV SGLLDEMKEK GVRADIVTYN TLIGALCCKG EIRKAVKLLD EMLMVGLEPE HRTYNNIING YCEKGNIKSA YEIRTRMEKG
501: RKRANVVTYN VFIKHLCRMG KMEEANELLN EMLEKGLVPN KVTYETIKEG MMEKGYVPDV PAVQPSACVS VQLFSSDIPC NRPPLLL

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.