Factsheet for GSMUA_Achr3P01360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160000.1	Wheat	mitochondrion	45.66	47.78
Zm00001d039548_P001	Maize	mitochondrion	39.69	45.37
HORVU1Hr1G042440.2	Barley	mitochondrion	48.36	43.8
TraesCS1D01G157200.1	Wheat	mitochondrion	47.59	43.03
TraesCS1B01G176600.2	Wheat	mitochondrion	48.36	42.76
KXG31660	Sorghum	mitochondrion	28.13	42.69
VIT_14s0060g01220.t01	Wine grape	mitochondrion	49.13	41.87
Os10t0484300-01	Rice	mitochondrion	46.63	41.87
KRH29211	Soybean	cytosol	46.82	41.68
PGSC0003DMT400007278	Potato	mitochondrion	47.59	40.83
Solyc01g100450.1.1	Tomato	mitochondrion	47.21	40.5
CDX94941	Canola	cytosol, plastid	42.97	36.26
Bra019985.1-P	Field mustard	cytosol	42.2	35.78
CDX93473	Canola	mitochondrion	41.81	35.46
AT1G09820.1	Thale cress	mitochondrion, plastid	40.85	34.98
GSMUA_Achr1P12600_001	Banana	extracellular	17.92	26.65
GSMUA_Achr8P16100_001	Banana	cytosol	13.68	26.01
GSMUA_Achr11P...	Banana	cytosol	22.16	23.42
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	26.4	22.64
GSMUA_Achr1P06500_001	Banana	cytosol	20.42	20.78
GSMUA_Achr1P17710_001	Banana	cytosol	24.28	20.62
GSMUA_Achr8P04810_001	Banana	mitochondrion	28.32	20.22
GSMUA_Achr6P35510_001	Banana	cytosol	26.78	19.83
GSMUA_AchrUn_...	Banana	mitochondrion	21.97	19.83
GSMUA_Achr8P03570_001	Banana	mitochondrion	25.43	19.56
GSMUA_Achr6P34120_001	Banana	cytosol	18.5	19.32
GSMUA_AchrUn_...	Banana	cytosol	16.96	19.26
GSMUA_Achr3P04340_001	Banana	cytosol	24.08	19.0
GSMUA_Achr5P09880_001	Banana	mitochondrion	24.08	18.71
GSMUA_Achr1P12220_001	Banana	mitochondrion	22.35	16.67
GSMUA_Achr1P22450_001	Banana	mitochondrion	17.73	16.43
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	22.35	16.38

Protein Annotations

EnsemblPlants:GSMUA_Achr3P01360_001	EnsemblPlants:GSMUA_Achr3T01360_001	EnsemblPlantsGene:GSMUA_Achr3G01360_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI000295A28E	UniProt:M0SAV4	MapMan:35.1	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At1g09820 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01360_001]

Coordinates

chr3:-:970362..973468

Molecular Weight (calculated)

57643.0 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.151

Length

519 amino acids

Sequence
(BLAST)

001: MRLFHRHHRL RPAKTTRATS FSSSTTSTTS STPPDPSTLS HLVSRQHWSR LKTLISASAA AAATTPADAA VSFLRILLDS ASTSSVAALR FSRWSQSHYR
101: CPRAFDLPLH CRLLLALAAD KLYSDLRSEL HYLVRSGPHS AVSILHTLAV SAEPSRRRHD SLSILADMLI LALVKNSRTS AAIEAGKLRR AGDLTEDMKS
201: WGFSPSVITY NTLIDGYCKK GGAGKMYRAD VLLKQMVDAN IHPNVVTFNT LIDGYCKDGN SSSAMRFFQE MKRQELSPGV VTYNTLINGL SCEGKLNEAL
301: ELLKEMEELN LAPNVVTYNA IINGFCKKKM MAEAKGMLDV IMGKNLLPNV ITYNTLIDGY CRAGMMEDAM GLKRLMLEKG ISHNVSTFSC LINGFCKDGD
401: TKSVVKLLDE MREKTVRPDI VIYNVLIRAL CKEGELTKAV KLLDETLERG GKRANVVTYN VFIKYFCGRG KMEEANEFLN EMLEKGLVPN RVTYNMIKDE
501: MIERGYVPSI DGHLCNNAS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.