Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93473 | Canola | mitochondrion | 80.69 | 79.9 |
| Bra019985.1-P | Field mustard | cytosol | 79.87 | 79.08 |
| CDX94941 | Canola | cytosol, plastid | 79.37 | 78.21 |
| KRH29211 | Soybean | cytosol | 51.16 | 53.17 |
| VIT_14s0060g01220.t01 | Wine grape | mitochondrion | 51.98 | 51.72 |
| Solyc01g100450.1.1 | Tomato | mitochondrion | 49.01 | 49.09 |
| PGSC0003DMT400007278 | Potato | mitochondrion | 49.01 | 49.09 |
| KXG31660 | Sorghum | mitochondrion | 25.08 | 44.44 |
| Zm00001d039548_P001 | Maize | mitochondrion | 32.34 | 43.17 |
| GSMUA_Achr3P01360_001 | Banana | mitochondrion | 34.98 | 40.85 |
| TraesCS1A01G160000.1 | Wheat | mitochondrion | 32.01 | 39.11 |
| TraesCS1D01G157200.1 | Wheat | mitochondrion | 36.8 | 38.85 |
| Os10t0484300-01 | Rice | mitochondrion | 36.8 | 38.58 |
| HORVU1Hr1G042440.2 | Barley | mitochondrion | 36.47 | 38.57 |
| TraesCS1B01G176600.2 | Wheat | mitochondrion | 36.96 | 38.16 |
| AT2G15630.1 | Thale cress | mitochondrion | 27.06 | 26.16 |
| AT4G26680.1 | Thale cress | mitochondrion | 22.11 | 25.72 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 23.43 | 25.09 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 24.59 | 23.88 |
| AT1G09680.1 | Thale cress | mitochondrion | 22.44 | 22.41 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 27.56 | 22.06 |
| AT5G38730.1 | Thale cress | cytosol | 21.62 | 21.98 |
| AT5G40400.2 | Thale cress | cytosol | 24.59 | 21.88 |
| AT1G22960.1 | Thale cress | mitochondrion | 25.74 | 21.73 |
| AT5G39710.1 | Thale cress | mitochondrion | 26.4 | 21.42 |
| AT1G11710.1 | Thale cress | mitochondrion | 23.1 | 21.31 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 16.01 | 21.0 |
| AT1G05670.3 | Thale cress | mitochondrion | 25.41 | 20.78 |
| AT2G01740.1 | Thale cress | cytosol | 18.98 | 20.57 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 25.08 | 19.97 |
| AT5G61400.1 | Thale cress | mitochondrion | 20.46 | 18.96 |
| AT2G19280.1 | Thale cress | mitochondrion | 20.13 | 17.6 |
| AT4G19890.1 | Thale cress | plastid | 20.13 | 17.4 |
| AT2G16880.1 | Thale cress | cytosol | 21.12 | 17.23 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:837514 | ProteinID:AAB60736.1 | ProteinID:AEE28499.1 | ArrayExpress:AT1G09820 |
| EnsemblPlantsGene:AT1G09820 | RefSeq:AT1G09820 | TAIR:AT1G09820 | RefSeq:AT1G09820-TAIR-G | EnsemblPlants:AT1G09820.1 | TAIR:AT1G09820.1 |
| Unigene:At.66804 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_172453.1 | UniProt:O04504 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF745 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A9C66 |
Description
Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
Coordinates
chr1:-:3190254..3192488
Molecular Weight (calculated)
68051.1 Da
IEP (calculated)
8.805
GRAVY (calculated)
-0.200
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.