CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039548_P001	Maize	mitochondrion	90.64	68.28
HORVU1Hr1G042440.2	Barley	mitochondrion	74.85	44.68
TraesCS1D01G157200.1	Wheat	mitochondrion	74.27	44.25
TraesCS1A01G160000.1	Wheat	mitochondrion	64.04	44.15
TraesCS1B01G176600.2	Wheat	mitochondrion	75.73	44.12
Os10t0484300-01	Rice	mitochondrion	72.51	42.91
GSMUA_Achr3P01360_001	Banana	mitochondrion	42.69	28.13
VIT_14s0060g01220.t01	Wine grape	mitochondrion	49.71	27.91
PGSC0003DMT400007278	Potato	mitochondrion	48.54	27.44
KRH29211	Soybean	cytosol	46.2	27.1
Solyc01g100450.1.1	Tomato	mitochondrion	47.66	26.94
AT1G09820.1	Thale cress	mitochondrion, plastid	44.44	25.08
Bra019985.1-P	Field mustard	cytosol	44.44	24.84
CDX93473	Canola	mitochondrion	44.15	24.67
CDX94941	Canola	cytosol, plastid	43.86	24.39
EER99880	Sorghum	cytosol	31.58	22.59
OQU81794	Sorghum	mitochondrion, peroxisome	24.27	20.6
OQU87837	Sorghum	plastid	23.1	19.27
KXG40115	Sorghum	cytosol	24.27	19.21
OQU90004	Sorghum	cytosol	26.02	18.74
OQU75844	Sorghum	cytosol	27.49	17.06
EES00885	Sorghum	cytosol, mitochondrion	26.9	16.06
EES10956	Sorghum	mitochondrion	28.36	15.8
EER96725	Sorghum	mitochondrion, plastid	28.07	15.07
EES09272	Sorghum	plastid	30.99	14.58
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	23.68	13.5
OQU78719	Sorghum	cytosol	29.53	13.22
KXG39937	Sorghum	cytosol, plastid	30.41	13.1
KXG22891	Sorghum	mitochondrion	19.88	11.62
OQU83816	Sorghum	mitochondrion	14.33	11.04

Protein Annotations

EnsemblPlants:KXG31660	EnsemblPlantsGene:SORBI_3003G038200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF745
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:KXG31660	ProteinID:KXG31660.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI00081ADC83	UniProt:A0A1B6Q1A1	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:3583228..3584556

Molecular Weight (calculated)

37618.0 Da

IEP (calculated)

9.543

GRAVY (calculated)

-0.118

Length

342 amino acids

Sequence
(BLAST)

001: PLAAYGAFLL AGADYPRYRP SAFSVNALLA ALVRADRVDL AERAFRAALR RRVSPDKFTF NIVISGLCKT GQLRKAGDVA KDMRGWGLMP SVVTYNTLID
101: GYYNVLNGFC KKGMMVEAEG WVDGMAQKGM KPNVVTYNTL IDGYQRLGKM KEATAAKGAM AGKGISPDVK TYNCLITGFT TSTDWRSVSG LLDEMKETGV
201: KADLVTYNVL IGALCCKGEV RKAVKLLDEM VEVGLEPKHR TYNAIINGFC EKGDAKGAHD IRIRMEKCKK RANVVTCNVF LKYFCKMGKM DEANVVLNEM
301: LEKGLVPNRI TYEIINSGMI EKGYVPDIRG YAADVSKNLT SS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.