Factsheet for Bra019985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93473	Canola	mitochondrion	95.42	95.42
CDX94941	Canola	cytosol, plastid	93.3	92.85
AT1G09820.1	Thale cress	mitochondrion, plastid	79.08	79.87
KRH29211	Soybean	cytosol	49.84	52.32
VIT_14s0060g01220.t01	Wine grape	mitochondrion	51.8	52.05
Solyc01g100450.1.1	Tomato	mitochondrion	48.04	48.59
PGSC0003DMT400007278	Potato	mitochondrion	48.04	48.59
Zm00001d039548_P001	Maize	mitochondrion	33.5	45.15
KXG31660	Sorghum	mitochondrion	24.84	44.44
GSMUA_Achr3P01360_001	Banana	mitochondrion	35.78	42.2
TraesCS1A01G160000.1	Wheat	mitochondrion	33.17	40.93
HORVU1Hr1G042440.2	Barley	mitochondrion	37.42	39.97
TraesCS1D01G157200.1	Wheat	mitochondrion	37.42	39.9
Os10t0484300-01	Rice	mitochondrion	37.58	39.79
TraesCS1B01G176600.2	Wheat	mitochondrion	37.42	39.01
Bra015229.1-P	Field mustard	mitochondrion	27.94	27.01
Bra040883.1-P	Field mustard	endoplasmic reticulum	24.67	26.26
Bra015447.1-P	Field mustard	cytosol	17.81	25.0
Bra022891.1-P	Field mustard	plastid	24.18	24.1
Bra020001.1-P	Field mustard	mitochondrion	23.37	23.83
Bra028204.1-P	Field mustard	cytosol	22.71	23.44
Bra025578.1-P	Field mustard	plastid	23.86	23.43
Bra025651.1-P	Field mustard	mitochondrion	27.78	22.82
Bra005695.1-P	Field mustard	mitochondrion	26.8	22.13
Bra024831.1-P	Field mustard	mitochondrion	26.47	22.13
Bra013432.1-P	Field mustard	cytosol	17.32	21.41
Bra017434.1-P	Field mustard	cytosol, plastid	19.12	21.01
Bra035931.1-P	Field mustard	mitochondrion	21.73	20.56
Bra024554.1-P	Field mustard	cytosol	11.27	20.41
Bra038853.1-P	Field mustard	mitochondrion	20.91	18.39
Bra024552.1-P	Field mustard	cytosol	6.7	16.27
Bra002000.1-P	Field mustard	cytosol	7.35	14.85
Bra026410.1-P	Field mustard	mitochondrion	23.69	10.99

Protein Annotations

EnsemblPlants:Bra019985.1	EnsemblPlants:Bra019985.1-P	EnsemblPlantsGene:Bra019985	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF745	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000253E929	UniProt:M4DTZ2	MapMan:35.1	:	:	:

Description

AT1G09820 (E=2e-277) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:-:3377382..3379220

Molecular Weight (calculated)

68795.1 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.195

Length

612 amino acids

Sequence
(BLAST)

001: MLIKSRKFSD LKDVFPRKFS SLTTLCPSSS PITKSPFPPS RDDVAAIADL IEKQHWSKLK LLHVKDINNP NELFHQLISS NLDPELCLRY YTWLIANIRN
101: TSLSLELTFN LLHSLANAKK YSKIRSFLDG FVKKRSDHPI HSIFHAISLC DNLCVNSILA DMLVLAYANN LRLESALEAF KRAGYYGYKL SALSCKPLMV
201: ALLNEKRFAD VEFVYKEMIR RRIQPNVFTF NVVINSFCKK GKMEKAKDVM EDMKVYGTSP NVVSYNTLID GYCKLGGVGK MYKADAVLKE MVESSKVSPN
301: LTTFNILIDG FWKDGNYSGS MKVFREMLEQ DVKPNVVTYN SLINGLCSGG KVSEATCMHD EMVSAGVEPN LVTYNSLING FCKNGMMKEA LDMFASLKGR
401: GIVPTAKTYN MLIDAYCKSG KVEDGFGLKE EMEREGIVAN VETYNCLIGG LCRNGNIEGA KKLFDQLSGK GLPDLVTYHI LMDGYCSRGE SRKAAMILKE
501: GISKMGLKPR HLTYNILMEG YCKEGNLKGA ANVRVQMEKE RRLRMNVASY NVLLQGYSQK GKMEDANRLL NEMLEKGLIP NRITYEIVKA EMVDKGFVPD
601: IQGHLFNVST KS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.