Factsheet for HORVU1Hr1G042440.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160000.1	Wheat	mitochondrion	80.28	92.74
TraesCS1D01G157200.1	Wheat	mitochondrion	92.84	92.68
TraesCS1B01G176600.2	Wheat	mitochondrion	92.15	89.95
Os10t0484300-01	Rice	mitochondrion	75.92	75.26
KXG31660	Sorghum	mitochondrion	44.68	74.85
Zm00001d039548_P001	Maize	mitochondrion	57.59	72.69
GSMUA_Achr3P01360_001	Banana	mitochondrion	43.8	48.36
KRH29211	Soybean	cytosol	42.58	41.85
VIT_14s0060g01220.t01	Wine grape	mitochondrion	43.46	40.89
PGSC0003DMT400007278	Potato	mitochondrion	41.36	39.17
Solyc01g100450.1.1	Tomato	mitochondrion	41.19	39.01
Bra019985.1-P	Field mustard	cytosol	39.97	37.42
CDX93473	Canola	mitochondrion	39.97	37.42
CDX94941	Canola	cytosol, plastid	39.79	37.07
AT1G09820.1	Thale cress	mitochondrion, plastid	38.57	36.47
HORVU2Hr1G019920.1	Barley	cytosol	19.72	30.21
HORVU3Hr1G086290.19	Barley	plastid	21.12	29.73
HORVU2Hr1G082620.1	Barley	plastid	23.91	27.08
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	9.95	26.03
HORVU5Hr1G009510.3	Barley	cytosol	24.78	24.07
HORVU2Hr1G080860.1	Barley	plastid	26.35	23.89
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	28.8	23.88
HORVU1Hr1G093590.2	Barley	cytosol	9.6	23.11
HORVU2Hr1G019880.2	Barley	cytosol	14.49	23.06
HORVU4Hr1G074200.9	Barley	mitochondrion	27.4	23.02
HORVU6Hr1G087430.7	Barley	cytosol	24.43	22.69
HORVU7Hr1G023200.23	Barley	cytosol	26.88	22.19
HORVU2Hr1G080360.2	Barley	mitochondrion	19.2	21.48
HORVU7Hr1G028150.1	Barley	mitochondrion	18.67	21.19
HORVU5Hr1G042300.1	Barley	plastid	26.0	20.9
HORVU0Hr1G013090.3	Barley	cytosol, plastid	20.77	20.55
HORVU5Hr1G066340.2	Barley	mitochondrion	22.16	20.48
HORVU2Hr1G046710.2	Barley	cytosol, plastid	26.7	19.77
HORVU4Hr1G070310.1	Barley	plastid	25.65	17.58

Protein Annotations

EnsemblPlants:HORVU1Hr1G042440.2	EnsemblPlantsGene:HORVU1Hr1G042440	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B46699F
UniProt:A0A287FAJ8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:307756188..307759195

Molecular Weight (calculated)

62575.6 Da

IEP (calculated)

9.371

GRAVY (calculated)

0.021

Length

573 amino acids

Sequence
(BLAST)

001: PLRTLLRHLA AGRFASLQAL TGAATAPAAH RVLHLLLRTT PAPPLPDLVS LARWSRSHFR APLPLQLHAL LLARLASHGL HPLLRSELHA LAASRLHSPA
101: SILRALPASS PAAAPLVADM LVLALARASQ PLAAYEAFLL LGDNHPRHRP SAFSVNSLLS ALFAAERVDL AERAFKAALR RRVSPDLFTF NIVISGLCKA
201: GQLRKAGDVA KDIRAWGLVP SVATYNALID GYCKKGRVGR MYHVDALLKE MVEAGILPNV VTFNVLVSGY CQDSNTAAAV RVFEEMKQQG IAPSMGTYNA
301: LVWGLCREGK VEEGVKLVDE MQGLGLAPNV ATLNSVLNGF CKKGVMADAE NWLDGMAWRN IEPDVVTYNT LIDGYRRLGK MKDATAVREA MAGKGISPNV
401: RTYNCLIAGF DQSGDWRSVS GLLDEMKEKG VRADIVTYNT LIVALCCKGE VGKAVKLLDE MLMVGLEPEH RTYNNIINGY CEKGNIKSAF EVRTRMEKAR
501: KRANVVTYNV FIKHLCRMGK MEEANELLNE MLEKGLVPNK VTYEIIKEGM IEKGYVPDVR GLACSEAPEN LPS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.