Factsheet for HORVU5Hr1G042300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G128400.1	Wheat	plastid	88.36	93.75
TraesCS5B01G127400.1	Wheat	plastid	88.22	93.6
TraesCS5D01G136000.1	Wheat	plastid	88.08	93.45
Os12t0152600-01	Rice	plastid	74.05	73.74
Zm00001d000093_P001	Maize	cytosol	52.73	71.08
Zm00001d023422_P001	Maize	plastid	70.97	70.67
Zm00001d044707_P001	Maize	plastid	69.99	70.08
EES09272	Sorghum	plastid	71.39	70.01
Zm00001d052540_P001	Maize	plastid	69.42	68.65
OQU78719	Sorghum	cytosol	71.67	66.88
GSMUA_Achr6P35510_001	Banana	cytosol	49.79	50.64
KRH16451	Soybean	plastid	40.67	42.21
KRH18049	Soybean	plastid	40.39	41.92
VIT_01s0011g04390.t01	Wine grape	plastid	41.8	41.5
Bra024554.1-P	Field mustard	cytosol	19.64	41.42
Bra024552.1-P	Field mustard	cytosol	14.31	40.48
PGSC0003DMT400078379	Potato	cytosol	39.13	40.32
CDY04754	Canola	cytosol	13.6	40.08
CDY04764	Canola	cytosol	19.78	39.83
CDY21405	Canola	cytosol	23.0	38.77
Solyc05g008560.1.1	Tomato	mitochondrion	40.39	38.2
AT1G22960.1	Thale cress	mitochondrion	34.64	34.4
HORVU1Hr1G093590.2	Barley	cytosol	9.96	29.83
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	9.12	29.68
HORVU2Hr1G082620.1	Barley	plastid	20.76	29.25
HORVU2Hr1G019920.1	Barley	cytosol	15.15	28.88
CDY04753	Canola	mitochondrion, plastid	16.83	28.85
HORVU7Hr1G023200.23	Barley	cytosol	26.09	26.8
HORVU1Hr1G042440.2	Barley	mitochondrion	20.9	26.0
HORVU5Hr1G066340.2	Barley	mitochondrion	22.16	25.48
HORVU4Hr1G074200.9	Barley	mitochondrion	24.26	25.37
HORVU0Hr1G013090.3	Barley	cytosol, plastid	20.48	25.22
HORVU3Hr1G086290.19	Barley	plastid	14.31	25.06
HORVU2Hr1G080860.1	Barley	plastid	21.74	24.53
HORVU2Hr1G019880.2	Barley	cytosol	11.92	23.61
HORVU6Hr1G087430.7	Barley	cytosol	20.2	23.34
HORVU2Hr1G046710.2	Barley	cytosol, plastid	25.11	23.13
HORVU5Hr1G009510.3	Barley	cytosol	19.07	23.05
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	22.3	23.01
HORVU2Hr1G080360.2	Barley	mitochondrion	16.13	22.46
HORVU7Hr1G028150.1	Barley	mitochondrion	15.29	21.58
HORVU4Hr1G070310.1	Barley	plastid	24.68	21.05

Protein Annotations

EnsemblPlants:HORVU5Hr1G042300.1	EnsemblPlantsGene:HORVU5Hr1G042300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000296F8FA	UniProt:M0XBF0	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr5H:+:322845510..322853904

Molecular Weight (calculated)

78371.2 Da

IEP (calculated)

7.306

GRAVY (calculated)

0.032

Length

713 amino acids

Sequence
(BLAST)

001: MLFPTRPCKS QAPAAAAAVA AISSLRLSSS SPAPIPPPYH DDNPFASLLT SDPPPPDPLR QVLATGDVHG ALRGLPRLAR QLFRWAEGTP HGFPRSASAF
101: AAVLVPLAEA SHNRAAYPVS LRAIQAGLLL PLISLLLTYP LSPSSHHLLN FLLRMSTKFV SKCQAQDPAP TSCSTQCLSA FQEMARQGVA PYVKVCNCVL
201: AMLCDAARWD DMRAVYSDML QLGVEPSIVT YNTLLDSFCK AGRIDQAVML LKDMETQAAG CLPNDVTYNV VINGLARNGE LGKAAQLVAR MRLSKQASAF
301: TYNPLISGLL ARGFVEKAEA LQQDMENDGI VPTVVTYNTL IHGLFKGGNV EAAELKFVEM RALGLQPDLI TYNSLINGHC KACNLEQALW LLGDLRRAGL
401: APTVLTYNIL INGYCRLGDL EGAMRFKEEM RAECCLPDVC TYTILMNGSC KAKNLDMVRV FFDEMLSKGL KPDCFAYNTR ISAELTLGAI SNGSQLREEM
501: MLSGISSDTV TYNILIDGLC KTGSLRDAYV LWMKMVSDGL QLDCVTYTCL IHAHCKRGLL RKANNIFHGM VASGLSPSAV TYTIFIHTYS KVGNLDSAYG
601: WFRKMLEEGV EPNEVTYNVL MNALCRIGRT ELAYQYFHEM LERGLAPNKY TYTLLIDGNC KKGNWVEAAR LYCEMHQKGI HPDHCTHNAL FKGFGEDHMH
701: DTIQYLENVV LGA

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.