CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G22960.1	Thale cress	mitochondrion	68.51	39.69
CDY21405	Canola	cytosol	28.61	28.13
VIT_01s0011g04390.t01	Wine grape	plastid	45.43	26.32
KRH16451	Soybean	plastid	39.9	24.16
KRH18049	Soybean	plastid	39.66	24.02
PGSC0003DMT400078379	Potato	cytosol	37.74	22.69
Solyc05g008560.1.1	Tomato	mitochondrion	39.18	21.62
GSMUA_Achr6P35510_001	Banana	cytosol	31.97	18.97
Os12t0152600-01	Rice	plastid	31.73	18.44
Zm00001d023422_P001	Maize	plastid	31.25	18.16
TraesCS5B01G127400.1	Wheat	plastid	29.33	18.15
TraesCS5D01G136000.1	Wheat	plastid	29.09	18.01
Zm00001d044707_P001	Maize	plastid	30.77	17.98
TraesCS5A01G128400.1	Wheat	plastid	28.85	17.86
EES09272	Sorghum	plastid	30.29	17.33
OQU78719	Sorghum	cytosol	31.73	17.28
Zm00001d052540_P001	Maize	plastid	29.81	17.2
HORVU5Hr1G042300.1	Barley	plastid	28.85	16.83
CDX94941	Canola	cytosol, plastid	24.52	16.59
CDX94298	Canola	mitochondrion	22.6	16.52
CDX93473	Canola	mitochondrion	24.04	16.34
Zm00001d000093_P001	Maize	cytosol	20.43	16.07
CDY36644	Canola	mitochondrion	23.56	15.48
CDX71231	Canola	mitochondrion	23.32	15.37
CDX74507	Canola	cytosol	21.88	15.35
CDY67116	Canola	cytosol	21.63	15.18
CDX86757	Canola	endoplasmic reticulum, extracellular	20.67	14.96
CDY50117	Canola	plastid	22.12	14.77
CDY42586	Canola	plastid	21.88	14.68
CDX93490	Canola	mitochondrion	21.15	14.67
CDY57780	Canola	endoplasmic reticulum	20.19	14.61
CDX94959	Canola	mitochondrion	20.67	14.14
CDY49798	Canola	mitochondrion	20.91	13.41
CDY11211	Canola	mitochondrion	23.8	13.36
CDY30265	Canola	mitochondrion	23.08	13.15
CDX84733	Canola	plastid	19.23	13.03
CDX79463	Canola	plastid	19.23	12.97
CDX74435	Canola	mitochondrion	22.6	12.62
CDY03072	Canola	mitochondrion	22.12	12.5
CDY47261	Canola	plastid	21.88	12.48
CDY17611	Canola	cytosol	17.31	12.14
CDY31404	Canola	cytosol	21.39	12.01
CDY51888	Canola	cytosol, mitochondrion, plastid	14.18	11.94
CDY39141	Canola	mitochondrion	19.71	11.85
Bra024554.1-P	Field mustard	cytosol	9.62	11.83
CDX82665	Canola	mitochondrion, plastid	19.71	11.83
CDX78962	Canola	cytosol	13.7	11.52
CDY04764	Canola	cytosol	9.62	11.3
CDX71311	Canola	cytosol	18.75	11.16
CDX80791	Canola	mitochondrion	15.14	10.48
CDX94295	Canola	cytosol	4.33	10.17
CDY17453	Canola	mitochondrion	10.82	9.8
CDY04100	Canola	plastid	10.82	9.8
CDX87212	Canola	plastid	14.42	9.36
CDX89313	Canola	mitochondrion	23.32	7.17
CDY10136	Canola	cytosol	4.57	5.19
CDY04754	Canola	cytosol	0.48	0.83

Protein Annotations

EnsemblPlants:CDY04753	EnsemblPlantsGene:GSBRNA2T00119423001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY04753	ProteinID:CDY04753.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEF503	MapMan:35.1	:	:	:

Description

BnaC05g18360D

Coordinates

chrLK031957:+:443199..445677

Molecular Weight (calculated)

47872.8 Da

IEP (calculated)

9.366

GRAVY (calculated)

-0.014

Length

416 amino acids

Sequence
(BLAST)

001: MILCLRLCRR ASRSSSSFST STSTSVSKLR YLFLSSSPPS NPESHYAHLI LTSHGYNPNR KWSSHQFHPL VTDPDLLIRV LNMIREKPEI AFHFFKWLQS
101: QRDLKQSFLA FAALLEILVE NDLMSKASWV AERSIDLGMH EIYHLLIEKS VVDKLIACKT LDLLLWVYTK KSMVKHCLLC FEKMITKGFS PSVRICNLVL
201: RLLRDKQMVN EAQEVYRTMM EREVVPNVIT FNTMLDSCFK AGDLHKVAKI LSEMERKNVY ATEVTYNILI NGFSKNGKME EARRFHGDMR TSGFPVTTYS
301: FNPLIEGYCK QGLFDEAWEV VELMLNAGVS PTASTYNIYI RALCEFRRTD DARRVLLGMA APDVVSYNTL MHGYVKLRKI REAFLLFGEL ILIVRNIRPS
401: VVTYNTLMDG KGLILM

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.