CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82665	Canola	mitochondrion, plastid	94.51	94.37
AT2G19280.1	Thale cress	mitochondrion	77.31	77.2
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	38.73	37.85
CDX71231	Canola	mitochondrion	23.99	26.31
CDY36644	Canola	mitochondrion	23.7	25.91
CDY57780	Canola	endoplasmic reticulum	20.23	24.35
CDX86757	Canola	endoplasmic reticulum, extracellular	20.09	24.17
CDX93490	Canola	mitochondrion	20.23	23.33
CDX74507	Canola	cytosol	19.8	23.1
CDY67116	Canola	cytosol	19.8	23.1
CDY51888	Canola	cytosol, mitochondrion, plastid	16.33	22.87
CDX94959	Canola	mitochondrion	19.8	22.53
CDX78962	Canola	cytosol	15.9	22.22
CDX94295	Canola	cytosol	5.64	22.03
CDY47261	Canola	plastid	23.12	21.95
CDY50117	Canola	plastid	19.51	21.67
CDY10136	Canola	cytosol	11.42	21.58
CDY03072	Canola	mitochondrion	22.83	21.47
CDY17611	Canola	cytosol	18.21	21.25
CDY42586	Canola	plastid	18.79	20.97
CDX93473	Canola	mitochondrion	18.5	20.91
CDX94941	Canola	cytosol, plastid	18.5	20.81
CDX79463	Canola	plastid	18.21	20.42
CDX84733	Canola	plastid	18.06	20.36
CDX87212	Canola	plastid	18.79	20.28
CDY30265	Canola	mitochondrion	21.24	20.14
CDY04100	Canola	plastid	13.15	19.83
CDY17453	Canola	mitochondrion	13.15	19.83
CDX74435	Canola	mitochondrion	21.24	19.73
CDY04753	Canola	mitochondrion, plastid	11.85	19.71
CDY21405	Canola	cytosol	11.71	19.15
CDY31404	Canola	cytosol	20.23	18.89
CDY11211	Canola	mitochondrion	20.09	18.76
CDY04764	Canola	cytosol	9.54	18.64
CDX94298	Canola	mitochondrion	14.88	18.1
CDY49798	Canola	mitochondrion	16.91	18.03
CDX71311	Canola	cytosol	17.63	17.45
CDX80791	Canola	mitochondrion	14.16	16.31
CDY04754	Canola	cytosol	4.91	14.05
CDX89313	Canola	mitochondrion	15.03	7.69

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078HNG7	EnsemblPlants:CDY39141	ProteinID:CDY39141	ProteinID:CDY39141.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067317001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE9332	:	:

Description

BnaA07g01370DBnaA07g01370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNG7]

Coordinates

chrLK032441:+:241995..244073

Molecular Weight (calculated)

77808.6 Da

IEP (calculated)

7.000

GRAVY (calculated)

0.082

Length

692 amino acids

Sequence
(BLAST)

001: MWVSSSILKS SGFARTKAFP YITFLFHPLA DYNNPRLLHS GSGNTTHFAS RHYASNTGVR SSKPFGEDFD TTLKHIEVSD SSVETIRNVL IKHSWIHRFE
101: SEFSIELDEY KVIRILDDLF AETSDASIAL YFFKWSELWI GAEHSSRSIC RMVHVLVSGN MNYRAVDMLL HLVKKRSDGE ERSLCLVMND LFETRGDREV
201: LETVFSMLVD CCVKERKVDM AMKLAYKMDQ FGIFPSRGVC ISLLKEILRI NNCLELAREF VEHMISRGRH LNAAVLTLFI SKHCSDGSFD KAWELLMEMK
301: QQYGIKPDIV AFTVFIHRLS KAGFLKEATS VLFNLKLFGI SQDYVSVSCV IDGFCKAGKP EEAVKLIHYF RLRPNIFVYS SFLSKICTEG HMLKASTVFQ
401: EIFELGYLPD CVCYTTMIGG YCKLGKIDEA FQYFGAMLKS GNSPSLTTYT LLIGGCSKFG DVGDAETLFR NMKVEGLVPD VVTYNNLMHG YGKTHQLNKV
501: FELMDGMRSA GVFPDVATYN ILIHSMVVRG YVDEANGIVN ELIRRGFVPS VLAFTDVIGG FSKKGDFQEA FLLWHYMADL RVQPDVVTCS ALLHGYCKAQ
601: RMGEAMVLFN KLLDAGLKPD VVLYNTLIHG YCSVGDVDKA CELIGMMVQR GMVPNESTYV ALVVGLEGKS GVNSEKHASM LLEEIFVANS AK

Best Arabidopsis Sequence Match ( AT2G19280.4 )
(BLAST)

001: MWVSIFNLKS SGLNHFCTRT KAFRYFWCRT FSLASLSENN SRFQTDSSRL PYSGSRYYHS SSKHFGEDFV SILKNIDVPR DCVETIRNVL VKHNWIQKYE
101: SGFSTELDQY TVIRILDDLF EETLDASIVL YFFRWSELWI GVEHSSRSIS RMIHILVSGN MNYRAVDMLL CLVKKCSGEE RSLCLVMKDL FETRIDRRVL
201: ETVFSILIDC CIRERKVNMA LKLTYKVDQF GIFPSRGVCI SLLKEILRVH GLELAREFVE HMLSRGRHLN AAVLSLFIRK YCSDGYFDKG WELLMGMKHY
301: GIRPDIVAFT VFIDKLCKAG FLKEATSVLF KLKLFGISQD SVSVSSVIDG FCKVGKPEEA IKLIHSFRLR PNIFVYSSFL SNICSTGDML RASTIFQEIF
401: ELGLLPDCVC YTTMIDGYCN LGRTDKAFQY FGALLKSGNP PSLTTSTILI GACSRFGSIS DAESVFRNMK TEGLKLDVVT YNNLMHGYGK THQLNKVFEL
501: IDEMRSAGIS PDVATYNILI HSMVVRGYID EANEIISELI RRGFVPSTLA FTDVIGGFSK RGDFQEAFIL WFYMADLRMK PDVVTCSALL HGYCKAQRME
601: KAIVLFNKLL DAGLKPDVVL YNTLIHGYCS VGDIEKACEL IGLMVQRGML PNESTHHALV LGLEGKRFVN SETHASMLLE EIIVAKWHLT SGG

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g19280 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.