CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025578.1-P	Field mustard	plastid	94.19	93.74
CDY50117	Canola	plastid	92.42	91.97
AT5G40400.2	Thale cress	cytosol	78.71	71.66
VIT_17s0000g03060.t01	Wine grape	plastid	54.35	51.06
KRH56553	Soybean	plastid	49.03	48.56
Solyc03g007390.2.1	Tomato	plastid	49.35	48.19
PGSC0003DMT400023499	Potato	plastid	48.55	47.85
CDY36644	Canola	mitochondrion	24.03	23.54
CDX93473	Canola	mitochondrion	23.23	23.53
CDX71231	Canola	mitochondrion	23.71	23.3
CDX94941	Canola	cytosol, plastid	23.06	23.25
CDX74507	Canola	cytosol	22.1	23.1
CDY67116	Canola	cytosol	22.1	23.1
CDX94298	Canola	mitochondrion	20.32	22.14
CDY04753	Canola	mitochondrion, plastid	14.68	21.88
CDX93490	Canola	mitochondrion	19.84	20.5
CDY49798	Canola	mitochondrion	21.13	20.18
CDY30265	Canola	mitochondrion	23.55	20.0
CDY17611	Canola	cytosol	19.03	19.9
CDX84733	Canola	plastid	19.68	19.87
CDX94959	Canola	mitochondrion	19.35	19.74
CDX87212	Canola	plastid	20.16	19.5
CDX74435	Canola	mitochondrion	23.39	19.46
CDX79463	Canola	plastid	19.35	19.45
CDY11211	Canola	mitochondrion	22.9	19.16
CDY03072	Canola	mitochondrion	22.74	19.16
CDY47261	Canola	plastid	22.1	18.79
CDY39141	Canola	mitochondrion	20.97	18.79
CDX82665	Canola	mitochondrion, plastid	20.65	18.47
CDY57780	Canola	endoplasmic reticulum	17.1	18.43
CDX86757	Canola	endoplasmic reticulum, extracellular	16.77	18.09
CDX94295	Canola	cytosol	5.0	17.51
CDY51888	Canola	cytosol, mitochondrion, plastid	13.71	17.21
CDY31404	Canola	cytosol	20.32	17.0
CDX78962	Canola	cytosol	13.55	16.97
CDX71311	Canola	cytosol	19.03	16.88
CDY21405	Canola	cytosol	10.81	15.84
CDX80791	Canola	mitochondrion	15.0	15.47
CDY04100	Canola	plastid	10.32	13.94
CDY17453	Canola	mitochondrion	10.32	13.94
CDY10136	Canola	cytosol	7.58	12.84
CDY04764	Canola	cytosol	7.26	12.71
CDY04754	Canola	cytosol	4.03	10.33
CDX89313	Canola	mitochondrion	20.65	9.46
Os03t0201200-01	Rice	nucleus	2.26	6.01

Protein Annotations

EnsemblPlants:CDY42586	EnsemblPlantsGene:GSBRNA2T00075088001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF657
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY42586	ProteinID:CDY42586.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EF29E2	UniProt:A0A078HY17	MapMan:35.1	:	:

Description

BnaA04g10270DBnaA04g10270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY17]

Coordinates

chrLK032529:-:253187..255049

Molecular Weight (calculated)

70926.4 Da

IEP (calculated)

7.621

GRAVY (calculated)

-0.050

Length

620 amino acids

Sequence
(BLAST)

001: MKRVSAINAA SLLKRDFSNL RFFSSSSSLQ LIPRCDDPPK PITFNPLYNL LPNTQNPNRI VDVICSSLNQ RDSLSSNLHK EVKSLIPHLG HREISRVLLR
101: FQSDATRALA FFNWVKSDLG KTPNVGNYCL LLHVLAWSKK FPLAMQFLCE LIELVVKEEE DVFTVLVSAT EECNWDPVVF DMLVKAYLKL GLVEESFSAF
201: RKVITFGFSV SVVTCNHLLN GLLKLDLTDD CWRVYRVMTR VGIHPNTHTF NILTSVVCNG SSFNQVNDFL EKMEEEEGFE PDLVTYNTLV SSYCRRGRLK
301: EGFYLYKIMY RRRVVPDLVT YTSLIKGLCK EGRVREAHQT FHRMVDRGIK ADCVAYNTLV YAYCKEGMME QAKRLLHEMI GNSVVPDRFT CKIIVEGFVR
401: EGRLLAAVNF VVELTRLRVR IPFEVCSFLI ESLCREGKPF AAKHLLERIR EEEGHKATPE TYNNLIESFS RCDAIEEALL LKEKLTSQNQ VLDVNSYRAL
501: IGCLCRIGRN REAESLMVEM VDSDVKPDSC ICGALVNGYC KELDFAKAES LLTFFAMEFR IFDMESYNLL VKAVCETASG YKKVLELQER MQRVGFVPNT
601: LSCKYMIQGL TQRDGLMSEI

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.