CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025651.1-P	Field mustard	mitochondrion	99.06	99.06
CDY30265	Canola	mitochondrion	94.63	96.58
AT5G39710.1	Thale cress	mitochondrion	86.98	86.75
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	65.64	64.17
KRG89236	Soybean	plastid	60.0	57.45
Solyc01g108410.1.1	Tomato	mitochondrion	58.52	56.84
PGSC0003DMT400066369	Potato	mitochondrion	58.26	56.58
OQU75844	Sorghum	cytosol	37.18	50.27
KRH49758	Soybean	plastid	46.17	48.86
GSMUA_Achr3P04340_001	Banana	cytosol	42.95	48.63
Zm00001d010121_P001	Maize	plastid	41.61	44.86
Zm00001d045319_P001	Maize	plastid	41.34	44.57
Os06t0152500-00	Rice	plastid	40.94	43.95
TraesCS7A01G109000.1	Wheat	plastid	40.94	43.88
TraesCS7D01G103900.1	Wheat	plastid	40.81	43.74
TraesCS7B01G006900.1	Wheat	plastid	40.4	43.31
HORVU7Hr1G023200.23	Barley	cytosol	40.13	43.08
CDY10136	Canola	cytosol	15.7	31.97
CDY17611	Canola	cytosol	23.22	29.17
CDY51888	Canola	cytosol, mitochondrion, plastid	18.93	28.54
CDY47261	Canola	plastid	27.92	28.53
CDX78962	Canola	cytosol	18.93	28.48
CDX86757	Canola	endoplasmic reticulum, extracellular	21.21	27.48
CDY21405	Canola	cytosol	15.57	27.42
CDX94941	Canola	cytosol, plastid	22.55	27.32
CDX93473	Canola	mitochondrion	22.28	27.12
CDX71231	Canola	mitochondrion	22.95	27.1
CDY36644	Canola	mitochondrion	22.95	27.01
CDY04754	Canola	cytosol	8.72	26.86
CDY57780	Canola	endoplasmic reticulum	20.67	26.78
CDX74507	Canola	cytosol	21.21	26.64
CDY67116	Canola	cytosol	21.21	26.64
CDY04764	Canola	cytosol	12.62	26.55
CDY17453	Canola	mitochondrion	16.24	26.36
CDX93490	Canola	mitochondrion	20.94	26.0
CDY03072	Canola	mitochondrion	25.5	25.82
CDY04100	Canola	plastid	15.7	25.49
CDX87212	Canola	plastid	21.88	25.43
CDX79463	Canola	plastid	20.94	25.28
CDX84733	Canola	plastid	20.81	25.24
CDX94959	Canola	mitochondrion	20.54	25.16
CDY31404	Canola	cytosol	24.83	24.97
CDY49798	Canola	mitochondrion	21.75	24.96
CDY11211	Canola	mitochondrion	24.43	24.56
CDX71311	Canola	cytosol	22.82	24.32
CDX94298	Canola	mitochondrion	18.12	23.73
CDY42586	Canola	plastid	19.46	23.39
CDY50117	Canola	plastid	19.46	23.27
CDY04753	Canola	mitochondrion, plastid	12.62	22.6
CDX80791	Canola	mitochondrion	17.58	21.8
CDX82665	Canola	mitochondrion, plastid	20.0	21.5
CDX94295	Canola	cytosol	5.1	21.47
CDY39141	Canola	mitochondrion	19.73	21.24
CDX89313	Canola	mitochondrion	19.87	10.94

Protein Annotations

EnsemblPlants:CDX74435	EnsemblPlantsGene:GSBRNA2T00114294001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX74435	ProteinID:CDX74435.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE41E3	MapMan:35.1	:	:

Description

BnaA04g09540D

Coordinates

chrLK031801:-:260888..263717

Molecular Weight (calculated)

83749.8 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.097

Length

745 amino acids

Sequence
(BLAST)

001: MLISKTLIRR SLSSLASPPP NSLLVDKALT FLRRHPYQLQ HISADFTPEA ASILLLKSQN DQALILKFLN WANPHHFFTL RCKCITLHIL TNFKLYKTAQ
101: TLAEDVAAKT QDASLVFRSL QETYASCDST SSVFDLVVKS YSRLNLIDKA LTIIHLAKGH GFMPGVLSYN AVLDATIRTK RDITFAEDVF KEMLETQVSP
201: NVFTYNILIR GFCSAGNLDA ALQFFDKMEK KGCLPNVVTY NTLIDGYCKL HRIDDGFELL RAMALKGLEP NLISYNVVIN GLCREGRMKE TSLVLTEMNR
301: RGFSLDEVTY NTLIKGYCKE GNFHQALVMH AEMLRHGLSP SVITYTSLIH SMCKAGNMNR AVEFLDQMRV RGLCPNERTY TTLVDGFSQK GCMNEAYRVL
401: KEMVDHGFRP SIVTYNALIN GHCVAGKMED ARAVLEDMKE KGLAPDVVSY STLLSGFCRS YDVHEAVRVK KEMVGKGIQP DTITYSSLIQ GFCEQRRTKE
501: ACDLFDEMLR VGLTPDEFTY TALINAHCAE GGLEKALNLH NEMVEKGLLP DVVTYSVLIN GLNKQARTRE AKRLLLKLFY DESVPSDVTY QTLIENCGNI
601: EFKSVVSLIK GFCMKGMMNE ADRVFDSMIE KNHKPDGTAY NVMIHGHCRG GDVRKAYRLY KEMVSCGFLV HTVTAIALVK AFHKEGMVDE LSSVIDNVLR
701: SCELSEAEQA KVLVEINHRE GNMDVVLDVL AEMAKDGFLP NTRRQ

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.