Factsheet for GSMUA_Achr3P04340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75844	Sorghum	cytosol	40.27	48.09
Os06t0152500-00	Rice	plastid	46.81	44.38
PGSC0003DMT400066275	Potato	cytosol	21.73	44.0
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	50.3	43.44
Zm00001d045319_P001	Maize	plastid	45.44	43.27
Zm00001d010121_P001	Maize	plastid	45.44	43.27
Bra025651.1-P	Field mustard	mitochondrion	48.94	43.22
CDX74435	Canola	mitochondrion	48.63	42.95
TraesCS7A01G109000.1	Wheat	plastid	45.29	42.88
CDY30265	Canola	mitochondrion	47.42	42.74
TraesCS7D01G103900.1	Wheat	plastid	45.14	42.73
TraesCS7B01G006900.1	Wheat	plastid	44.83	42.45
AT5G39710.1	Thale cress	mitochondrion	48.02	42.3
HORVU7Hr1G023200.23	Barley	cytosol	44.22	41.93
KRG89236	Soybean	plastid	48.18	40.75
Solyc01g108410.1.1	Tomato	mitochondrion	46.96	40.29
PGSC0003DMT400066369	Potato	mitochondrion	46.96	40.29
KRH49758	Soybean	plastid	37.39	34.94
GSMUA_Achr1P12600_001	Banana	extracellular	13.37	25.21
GSMUA_AchrUn_...	Banana	mitochondrion	21.43	24.52
GSMUA_Achr6P35510_001	Banana	cytosol	25.68	24.11
GSMUA_Achr3P01360_001	Banana	mitochondrion	19.0	24.08
GSMUA_Achr1P06500_001	Banana	cytosol	18.39	23.73
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	21.73	23.64
GSMUA_Achr1P22450_001	Banana	mitochondrion	19.91	23.39
GSMUA_Achr6P34120_001	Banana	cytosol	17.48	23.14
GSMUA_Achr11P...	Banana	cytosol	17.02	22.81
GSMUA_Achr8P04810_001	Banana	mitochondrion	23.86	21.6
GSMUA_Achr1P17710_001	Banana	cytosol	19.6	21.11
GSMUA_Achr8P16100_001	Banana	cytosol	8.66	20.88
GSMUA_Achr8P03570_001	Banana	mitochondrion	20.97	20.44
GSMUA_Achr1P12220_001	Banana	mitochondrion	20.36	19.25
GSMUA_Achr5P09880_001	Banana	mitochondrion	19.45	19.16
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	20.06	18.64
GSMUA_AchrUn_...	Banana	cytosol	12.01	17.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSMUA_Achr3G04340_001	EnsemblPlants:GSMUA_Achr3P04340_001
EnsemblPlants:GSMUA_Achr3T04340_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0SBQ2	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029695A1	SEG:seg	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At5g39710 [Source:GMGC_GENE;Acc:GSMUA_Achr3G04340_001]

Coordinates

chr3:-:2797682..2799949

Molecular Weight (calculated)

71868.7 Da

IEP (calculated)

8.334

GRAVY (calculated)

0.024

Length

658 amino acids

Sequence
(BLAST)

001: MAGLRPHGQP STGALDTGAA SNHHVLAEKA LTYLRHGCPL DSLAAAYTPE AAAHALLLAQ PHRPLLLAFL RWATPLPFFS ASLRPQSLAL HLLSRLRRLP
101: AALSLARRIA SRFPLPALFD SLASTLPLLR PPPPSPSAAF DLLIRSYSSL FLIPQALSAL SLTKDAGFSP ALLSYNSVLD AMFRSGRTPP RTVEKFLADM
201: TSSGVSPNVY TYNILIRGFC SWGELNRASS LFSEMALAGC SPNVVTYNTL IDGLCKSGKV DDARMLLTTM KENGLKPNLV TCNSIVNGLC HKGQVKESSK
301: FVDEMVREGL VPNVITYNTL VNGYCREGDV HRALLLQAEM AHKGVAPDVE TFTTLIDGFC KKGFLDDALL IMKQMKESGI RLSMLDKGIL PDAITYSSLI
401: RGLCEGKRLD DACKLFQKML SLGIRPDNYT YTTLIDGHCK EGELKKAFLL HDEMIKKGIH PDVVTYSVLI NGLQKAARTK EAKRLLLRMC HDESVPDIVT
501: YDILIDCCGK VEFKSLLSLL KGFCMKGLMN EADEVFNSIA ERNWKPDATA YNIVIHGHCR SGNVHRAVSL YEDMLQAGFL PNAITAISLI KGLSQFGTNE
601: KLDQIIQQLL GGSLPTYSQK SKVLVEVNHK DGNMDAVLDA LTDLAKDGLL PNGGELKG

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.