Factsheet for GSMUA_Achr6P30640_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0463300-01	Rice	cytosol	6.78	58.57
VIT_14s0006g00170.t01	Wine grape	mitochondrion	54.55	55.74
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	42.15	52.69
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	42.15	52.69
PGSC0003DMT400034430	Potato	cytosol	41.49	52.29
Solyc11g011410.1.1	Tomato	cytosol	41.32	52.08
KRH17313	Soybean	mitochondrion	40.83	51.78
KRH72966	Soybean	mitochondrion	52.23	51.38
TraesCS2A01G336700.1	Wheat	cytosol	50.74	50.41
TraesCS2B01G345200.1	Wheat	mitochondrion	50.41	50.08
EES10956	Sorghum	mitochondrion	50.74	50.0
TraesCS2D01G326200.1	Wheat	mitochondrion	50.25	49.92
Bra020001.1-P	Field mustard	mitochondrion	48.93	49.33
CDX93490	Canola	mitochondrion	48.93	49.33
CDX94959	Canola	mitochondrion	48.43	48.19
HORVU2Hr1G080860.1	Barley	plastid	49.92	47.78
AT1G09680.1	Thale cress	mitochondrion	47.6	47.45
GSMUA_Achr8P16100_001	Banana	cytosol	14.38	31.87
GSMUA_Achr1P12600_001	Banana	extracellular	16.53	28.65
GSMUA_Achr3P01360_001	Banana	mitochondrion	22.64	26.4
GSMUA_AchrUn_...	Banana	mitochondrion	24.79	26.09
GSMUA_Achr1P06500_001	Banana	cytosol	21.49	25.49
GSMUA_Achr11P...	Banana	cytosol	20.66	25.46
GSMUA_Achr6P34120_001	Banana	cytosol	20.33	24.75
GSMUA_Achr1P17710_001	Banana	cytosol	24.96	24.71
GSMUA_Achr8P03570_001	Banana	mitochondrion	26.28	23.56
GSMUA_Achr8P04810_001	Banana	mitochondrion	27.77	23.11
GSMUA_Achr5P09880_001	Banana	mitochondrion	24.3	22.01
GSMUA_Achr3P04340_001	Banana	cytosol	23.64	21.73
GSMUA_Achr6P35510_001	Banana	cytosol	24.79	21.4
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	24.63	21.05
GSMUA_AchrUn_...	Banana	cytosol	14.88	19.69
GSMUA_Achr1P12220_001	Banana	mitochondrion	21.65	18.82
GSMUA_Achr1P22450_001	Banana	mitochondrion	17.36	18.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSMUA_Achr6G30640_001	EnsemblPlants:GSMUA_Achr6P30640_001
EnsemblPlants:GSMUA_Achr6T30640_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TBK9	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00029547C2	SEG:seg	:	:	:	:

Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30640_001]

Coordinates

chr6:-:30597660..30599477

Molecular Weight (calculated)

66329.1 Da

IEP (calculated)

8.115

GRAVY (calculated)

0.035

Length

605 amino acids

Sequence
(BLAST)

001: MQALVTRRKP SLPLPPPVSP LFHPFLGHLN YSSSSHSPPW YSPPPQTPQA DPLLLTISHA VLDSATTSLD ASLKPLLPSI NPSLFVSLLT LNPLSLPPSS
101: LLDFFHWLSA RPTFRHTPLS YLAMAAFLLR HRLPSAALPL LRLLVARRGH HSAPALFSAA LQAVTPAPLQ SSLVGALAVE YARVGHVSDA IQCLRLSHRH
201: ALPLPLDSCS RLLDHLLKSN SPAAAWAFYS EILAAGFPPR VTTFNVLMHS FCKEGKIKQA KSIFNEITKH GSCPTVVSFN TLINGYCKVG NLEAGFELKG
301: RMLDVGLVPD VFTYSVLIRG LCKAGRLDDA NELFDEMCSK GLVPNAVTFT TLIDGHCKEG KIEDAMEIYK EMLKRSVRPD VITLNATVNV LCKSGDLGEA
401: NRVVEEMRHS GLLPDKVTYT TLIDGCCKEG DLKMAIEIKK RMAVEGIELD EVTYTTLIAG LSREGWVADA NTTLHEMVRA GLLPDMATYT MVIDAFCRKG
501: DVKMGFKLLK EMQSKGHKPG VVTYNVIMNG LCKLGQTKNA NMLLNAMINV GVAPDDITYN ILLDGHCKHG NIEDHEELKG EKGMILDFAS YSSFINELVK
601: RPKNH

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.