Factsheet for GSMUA_Achr1P17710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0083g00550.t01	Wine grape	cytosol	52.54	54.41
Solyc04g050550.1.1	Tomato	cytosol	49.59	51.53
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	48.61	49.5
Os02t0827900-03	Rice	plastid	46.97	49.48
KRH20741	Soybean	cytosol	47.46	49.4
KRH13392	Soybean	cytosol	47.14	49.06
Zm00001d018528_P001	Maize	cytosol	46.64	49.05
Bra028204.1-P	Field mustard	cytosol	44.84	46.21
CDX74507	Canola	cytosol	44.84	46.21
CDY67116	Canola	cytosol	44.84	46.21
TraesCS6D01G355100.1	Wheat	plastid	44.35	45.39
TraesCS6B01G408200.1	Wheat	plastid	44.35	45.39
AT5G38730.1	Thale cress	cytosol	44.03	45.13
TraesCS6A01G371200.1	Wheat	plastid	43.86	44.89
HORVU6Hr1G087430.7	Barley	cytosol	44.84	44.41
GSMUA_Achr1P12600_001	Banana	extracellular	15.06	26.36
GSMUA_Achr8P16100_001	Banana	cytosol	11.29	25.27
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	24.71	24.96
GSMUA_Achr3P01360_001	Banana	mitochondrion	20.62	24.28
GSMUA_Achr11P...	Banana	cytosol	18.82	23.42
GSMUA_AchrUn_...	Banana	mitochondrion	21.93	23.3
GSMUA_Achr6P34120_001	Banana	cytosol	17.84	21.93
GSMUA_Achr1P06500_001	Banana	cytosol	17.35	20.78
GSMUA_Achr1P22450_001	Banana	mitochondrion	18.99	20.71
GSMUA_Achr8P03570_001	Banana	mitochondrion	22.75	20.59
GSMUA_Achr8P04810_001	Banana	mitochondrion	24.39	20.5
GSMUA_Achr5P09880_001	Banana	mitochondrion	21.6	19.76
GSMUA_Achr3P04340_001	Banana	cytosol	21.11	19.6
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	22.42	19.35
GSMUA_AchrUn_...	Banana	cytosol	14.4	19.26
GSMUA_Achr1P12220_001	Banana	mitochondrion	20.79	18.25
GSMUA_Achr6P35510_001	Banana	cytosol	20.46	17.83

Protein Annotations

EnsemblPlants:GSMUA_Achr1P17710_001	EnsemblPlants:GSMUA_Achr1T17710_001	EnsemblPlantsGene:GSMUA_Achr1G17710_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002948793	UniProt:M0S0S9	MapMan:35.1	:

Description

Putative Pentatricopeptide repeat-containing protein At5g38730 [Source:GMGC_GENE;Acc:GSMUA_Achr1G17710_001]

Coordinates

chr1:-:13166167..13170443

Molecular Weight (calculated)

69122.8 Da

IEP (calculated)

8.886

GRAVY (calculated)

-0.164

Length

611 amino acids

Sequence
(BLAST)

001: MGGISHGRNE AAFIQGVCAI VSKGNWCTLW LPRVSDRFTT SNVHQILLQL SADTALSWNF FKWAQSIPHY HHSLPTNFTM VHLLTRSRRF QEARNLLQKF
101: AFKGFLSSPT VLSALLSDHG DQDSNSQILS WLVFIYSRSN KTHDAIQILE LMKSRGLRLD PHACSALLSA LAKARLTATA WNVYDDILRM GVVANVHILN
201: VMIHVCFKSG DTEKAEKLVS EMDGKVVRPD LFTYNTLISL YCKKGMHYEA LAVQERMEKE GIHPDIVTYN SLIYGFCKDG RMREASRLFK EIKGLRLREE
301: MEAKGMYPGV ATYNAIIRKL CEEGKMRAVN DLLNEMDDRR VQPDNVTCNT LINAYCKRGN MDFAWKLRNK MLESGQVLDQ FTYKALIHGF CKVQELDEAK
401: EVLLDMLDAG FAPNYSTYSW LVDSYCSLNN VEAVLSIPDE IAHRGLSVDK SLYRALIRRL CKRGLVDFAQ KAFNKMLEKG LLGDSLVYAS LAYAYLSTGK
501: RIAACEILNE MVKKQLIITA KIYKSLCASL ANDSGILDLL WSHAIERGLI ARNVYKLMQE AKLNSQNDTL NMSSQVKKHS YEEFNSATIG KVNGVLQERR
601: GGGGDVWKHL C

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.