CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74507	Canola	cytosol	97.3	97.3
AT5G38730.1	Thale cress	cytosol	86.85	86.41
VIT_14s0083g00550.t01	Wine grape	cytosol	58.01	58.31
KRH20741	Soybean	cytosol	55.82	56.39
KRH13392	Soybean	cytosol	55.31	55.88
Solyc04g050550.1.1	Tomato	cytosol	54.47	54.93
Zm00001d018528_P001	Maize	cytosol	45.03	45.96
TraesCS6B01G408200.1	Wheat	plastid	45.36	45.06
TraesCS6A01G371200.1	Wheat	plastid	45.19	44.89
GSMUA_Achr1P17710_001	Banana	cytosol	46.21	44.84
TraesCS6D01G355100.1	Wheat	plastid	45.03	44.72
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	44.35	43.83
Os02t0827900-03	Rice	plastid	42.66	43.62
HORVU6Hr1G087430.7	Barley	cytosol	44.52	42.79
CDX86757	Canola	endoplasmic reticulum, extracellular	23.95	24.7
CDX94959	Canola	mitochondrion	24.96	24.34
CDX93490	Canola	mitochondrion	24.62	24.33
CDY57780	Canola	endoplasmic reticulum	22.93	23.65
CDY36644	Canola	mitochondrion	24.79	23.22
CDX71231	Canola	mitochondrion	24.62	23.14
CDX84733	Canola	plastid	23.78	22.96
CDX93473	Canola	mitochondrion	23.44	22.71
CDY49798	Canola	mitochondrion	24.79	22.65
CDX94941	Canola	cytosol, plastid	23.44	22.6
CDX79463	Canola	plastid	23.27	22.37
CDY42586	Canola	plastid	23.1	22.1
CDY50117	Canola	plastid	23.1	21.99
CDY30265	Canola	mitochondrion	26.64	21.64
CDY04753	Canola	mitochondrion, plastid	15.18	21.63
CDY47261	Canola	plastid	26.48	21.54
CDX74435	Canola	mitochondrion	26.64	21.21
CDX94298	Canola	mitochondrion	20.24	21.09
CDY51888	Canola	cytosol, mitochondrion, plastid	17.54	21.05
CDX94295	Canola	cytosol	6.24	20.9
CDY17453	Canola	mitochondrion	15.85	20.48
CDY21405	Canola	cytosol	14.5	20.33
CDY04100	Canola	plastid	15.68	20.26
CDY17611	Canola	cytosol	20.24	20.24
CDY10136	Canola	cytosol	12.48	20.22
CDX78962	Canola	cytosol	16.86	20.2
CDY39141	Canola	mitochondrion	23.1	19.8
CDY11211	Canola	mitochondrion	24.62	19.7
CDX82665	Canola	mitochondrion, plastid	22.93	19.62
CDX87212	Canola	plastid	20.57	19.03
CDY31404	Canola	cytosol	23.78	19.03
CDY03072	Canola	mitochondrion	23.61	19.02
CDX80791	Canola	mitochondrion	18.55	18.3
CDX71311	Canola	cytosol	20.91	17.74
CDY04764	Canola	cytosol	10.12	16.95
CDY04754	Canola	cytosol	5.23	12.81
CDX89313	Canola	mitochondrion	20.57	9.02

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078JMV3	EnsemblPlants:CDY67116	ProteinID:CDY67116	ProteinID:CDY67116.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00058865001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EBE09C	SEG:seg

Description

BnaCnng53650DBnaCnng53650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMV3]

Coordinates

chrLK035772:-:505..2315

Molecular Weight (calculated)

67388.1 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.155

Length

593 amino acids

Sequence
(BLAST)

001: MVNIASANRE ALIAQSICGT ILKGNWKNIL KHKLDSGLLT SSITTQVLSE LSSYGGPSLA LSFFTWTNSI PSCKHTLQYS WKMILILTKH NHFKTAHQLL
101: DKLSQRELLS SPLVLRSLLN GVSEDPEVLS HVFSWMIIYY AKSGMIRDSI EVFEQIRSCG LRPHLQACTV LLNSLVKERL TDSVWKVFKK MGKLGVVANI
201: HLYNVLFHAC SKSGDPKRAE KLLSEMEERG VFPDLFTYNT LISAYCRKGM HYEALSVQDR MQRSGIGPDI VTYNSLIHGF CREGRMREAT RLFREIKGVV
301: TANHVTYTTL IDGYCRTNDI DEASRLREVM EARGFSPGVV TYNSILRKLC EDGRIREANR LLTEMSGKKI EPDNITCNTL INAYCKIGDM VSAVKVKKKM
401: VDSGLKLDIY SYKALIHGFC KVLEMDNAKE ELFSMLEKGL SPGYSTYSWL VDGFYDQNKQ DEISKLPEEF EKRGLCPDVA LYRGLIRRIC KLEQVDLAKV
501: LLDSMEKKGL MGDSVIYTTM AYAYWRTGKV TEASALFDIM YNRRLMVNLK LYKSLSASYA GDNEVLRFFW SHVGDKSLIS KSILRDMNRS EVL

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.