CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47261	Canola	plastid	94.26	47.33
AT1G05670.3	Thale cress	mitochondrion	81.42	40.22
OQU90004	Sorghum	cytosol	50.82	39.16
KRG99196	Soybean	cytosol	49.45	34.28
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	61.48	30.08
KRH45820	Soybean	cytosol, mitochondrion, plastid	60.38	29.78
PGSC0003DMT400058276	Potato	mitochondrion	57.38	27.93
GSMUA_Achr8P04810_001	Banana	mitochondrion	51.64	26.0
CDX94295	Canola	cytosol	12.02	24.86
Zm00001d006478_P001	Maize	mitochondrion	50.27	24.7
TraesCS2D01G229300.1	Wheat	mitochondrion	49.73	24.4
TraesCS2B01G273600.1	Wheat	plastid	48.91	23.99
Os07t0513200-01	Rice	mitochondrion	49.18	23.87
CDY04764	Canola	cytosol	22.68	23.45
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	49.18	23.41
HORVU2Hr1G046710.2	Barley	cytosol, plastid	48.91	23.13
CDY04754	Canola	cytosol	14.75	22.31
CDY21405	Canola	cytosol	24.32	21.04
CDY17611	Canola	cytosol	31.69	19.56
CDY17453	Canola	mitochondrion	24.04	19.17
CDY51888	Canola	cytosol, mitochondrion, plastid	25.41	18.83
CDY04100	Canola	plastid	23.5	18.74
CDX78962	Canola	cytosol	24.86	18.38
CDX80791	Canola	mitochondrion	27.6	16.81
CDY30265	Canola	mitochondrion	31.69	15.89
CDY03072	Canola	mitochondrion	31.69	15.76
CDX74435	Canola	mitochondrion	31.97	15.7
CDY11211	Canola	mitochondrion	31.15	15.38
CDX87212	Canola	plastid	26.23	14.98
CDX94941	Canola	cytosol, plastid	23.77	14.15
CDX93473	Canola	mitochondrion	23.22	13.89
CDX86757	Canola	endoplasmic reticulum, extracellular	21.58	13.74
CDY36644	Canola	mitochondrion	23.5	13.59
CDY57780	Canola	endoplasmic reticulum	21.31	13.57
CDX71231	Canola	mitochondrion	22.95	13.31
CDX93490	Canola	mitochondrion	21.58	13.17
CDY31404	Canola	cytosol	26.5	13.09
CDX94959	Canola	mitochondrion	21.31	12.83
CDX74507	Canola	cytosol	20.49	12.65
CDX84733	Canola	plastid	21.04	12.54
CDX79463	Canola	plastid	21.04	12.48
CDY67116	Canola	cytosol	20.22	12.48
CDX71311	Canola	cytosol	21.86	11.44
CDY39141	Canola	mitochondrion	21.58	11.42
CDY49798	Canola	mitochondrion	20.22	11.4
CDX82665	Canola	mitochondrion, plastid	21.04	11.11
CDY50117	Canola	plastid	13.39	7.87
CDX94298	Canola	mitochondrion	12.02	7.73
CDY42586	Canola	plastid	12.84	7.58
CDY04753	Canola	mitochondrion, plastid	5.19	4.57
CDX89313	Canola	mitochondrion	16.67	4.51

Protein Annotations

EnsemblPlants:CDY10136	EnsemblPlantsGene:GSBRNA2T00031945001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF949
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY10136	ProteinID:CDY10136.1	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0004EEA7E3	UniProt:A0A078F9U9	MapMan:35.1	:	:

Description

BnaC05g03790DBnaC05g03790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9U9]

Coordinates

chrLK032001:-:206646..208329

Molecular Weight (calculated)

40655.9 Da

IEP (calculated)

4.688

GRAVY (calculated)

-0.119

Length

366 amino acids

Sequence
(BLAST)

001: MLSLDIAPDV VTYTAVISGF CRVGDMVEAG KLFHEMLCRG LEPDSVTFTE VINGYCKAGE MKEAFSVHNR MIQAGCSPNV VTYSALIDGL CKEGDLDSAN
101: DLLHEMWKIG LQPNLFTYNS IVNGLCKSGS IEEAVKLVGE FEAAGINPDA VTYTTLMDAY CKAGEMSKAQ EVLEEMLGRG IEPTVVTFNV LMNGFCLNGM
201: LEDGEKLLNW MLAKGIAPNA TTYNSLVKLY CIRGDVKAAA AVYKDMCARE VGPDGRTYEN LIRGHCKARN MKEAWFLYRG MVEKGFSVSA GTYSDLIKGF
301: FKRKKFAEAR EVFEEMKREG LAADKEIYDF FSDVKLKGRR RTDTVVDPVD EIIESYLVDD ELREAN

Best Arabidopsis Sequence Match ( AT1G05670.3 )
(BLAST)

001: MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
101: YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
201: MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
301: WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
401: DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
501: LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
601: SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
701: KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N

Arabidopsis Description

Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A068FPW3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.