Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94298 | Canola | mitochondrion | 88.14 | 27.42 |
| AT4G26680.1 | Thale cress | mitochondrion | 77.97 | 26.49 |
| GSMUA_Achr1P12600_001 | Banana | extracellular | 44.07 | 22.35 |
| KRH44246 | Soybean | cytosol | 58.19 | 20.64 |
| HORVU6Hr1G084410.1 | Barley | cytosol, mitochondrion | 24.29 | 19.63 |
| VIT_12s0057g00740.t01 | Wine grape | mitochondrion | 54.8 | 18.3 |
| HORVU1Hr1G093590.2 | Barley | cytosol | 24.29 | 18.07 |
| PGSC0003DMT400015722 | Potato | cytosol | 50.85 | 16.98 |
| Solyc07g047620.1.1 | Tomato | cytosol, mitochondrion | 50.28 | 16.79 |
| TraesCS2B01G343000.1 | Wheat | cytosol, plastid | 39.55 | 13.94 |
| HORVU2Hr1G080360.2 | Barley | mitochondrion | 39.55 | 13.67 |
| TraesCS2D01G324100.1 | Wheat | plastid | 38.42 | 13.55 |
| Zm00001d030479_P001 | Maize | plastid | 37.85 | 13.29 |
| Os10t0363500-00 | Rice | endoplasmic reticulum | 38.42 | 13.28 |
| TraesCS2A01G339000.1 | Wheat | cytosol | 38.98 | 12.57 |
| CDY10136 | Canola | cytosol | 24.86 | 12.02 |
| Bra026410.1-P | Field mustard | mitochondrion | 88.14 | 11.83 |
| CDX89313 | Canola | mitochondrion | 89.27 | 11.68 |
| CDY17453 | Canola | mitochondrion | 22.6 | 8.71 |
| CDY21405 | Canola | cytosol | 20.34 | 8.51 |
| CDY04100 | Canola | plastid | 21.47 | 8.28 |
| CDY51888 | Canola | cytosol, mitochondrion, plastid | 22.6 | 8.1 |
| CDX78962 | Canola | cytosol | 22.6 | 8.08 |
| CDY04764 | Canola | cytosol | 15.82 | 7.91 |
| CDY57780 | Canola | endoplasmic reticulum | 25.42 | 7.83 |
| CDX86757 | Canola | endoplasmic reticulum, extracellular | 23.73 | 7.3 |
| CDX93490 | Canola | mitochondrion | 24.29 | 7.17 |
| CDY17611 | Canola | cytosol | 23.16 | 6.91 |
| CDX94959 | Canola | mitochondrion | 23.73 | 6.91 |
| CDX93473 | Canola | mitochondrion | 23.73 | 6.86 |
| CDX94941 | Canola | cytosol, plastid | 23.73 | 6.83 |
| CDX71231 | Canola | mitochondrion | 24.29 | 6.81 |
| CDY36644 | Canola | mitochondrion | 24.29 | 6.79 |
| CDY47261 | Canola | plastid | 27.68 | 6.72 |
| CDY67116 | Canola | cytosol | 20.9 | 6.24 |
| CDY31404 | Canola | cytosol | 25.99 | 6.21 |
| CDX84733 | Canola | plastid | 21.47 | 6.19 |
| CDX79463 | Canola | plastid | 21.47 | 6.16 |
| CDX74507 | Canola | cytosol | 20.34 | 6.07 |
| CDY39141 | Canola | mitochondrion | 22.03 | 5.64 |
| CDX82665 | Canola | mitochondrion, plastid | 22.03 | 5.63 |
| CDY03072 | Canola | mitochondrion | 23.16 | 5.57 |
| CDY30265 | Canola | mitochondrion | 21.47 | 5.21 |
| CDX71311 | Canola | cytosol | 20.34 | 5.15 |
| CDX87212 | Canola | plastid | 18.64 | 5.15 |
| CDX74435 | Canola | mitochondrion | 21.47 | 5.1 |
| CDY49798 | Canola | mitochondrion | 18.64 | 5.08 |
| CDY42586 | Canola | plastid | 17.51 | 5.0 |
| CDY11211 | Canola | mitochondrion | 20.34 | 4.86 |
| CDX80791 | Canola | mitochondrion | 16.38 | 4.83 |
| CDY50117 | Canola | plastid | 16.38 | 4.65 |
| CDY04753 | Canola | mitochondrion, plastid | 10.17 | 4.33 |
| CDY04754 | Canola | cytosol | 5.08 | 3.72 |
Protein Annotations
| EnsemblPlants:CDX94295 | EnsemblPlantsGene:GSBRNA2T00157387001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:PPR_long | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF415 | PFAM:PF17177 | PFscan:PS51375 | ProteinID:CDX94295 | ProteinID:CDX94295.1 | SEG:seg |
| TIGRFAMs:TIGR00756 | UniParc:UPI0004EEBFE2 | MapMan:35.1 | : | : | : |
Description
BnaC01g18890D
Coordinates
chrLK031881:-:53680..54315
Molecular Weight (calculated)
20331.6 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.499
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSSEPSKPQ NSSMVGDHEM AYRFYEDMVF KGIKRDILTY NALILRLCKQ AKTKKAAHFV KELDKENLVP NSSTFSALIM GQCVRRNVDR GFELYRSMIR
101: SGCHPNEQTF DVLMSAFCKN EDFDGAAQML KEMVRRSVPL DSRTVHQVCN GLEHQGRDQL AQELLKELEA KKFLLGN
101: SGCHPNEQTF DVLMSAFCKN EDFDGAAQML KEMVRRSVPL DSRTVHQVCN GLEHQGRDQL AQELLKELEA KKFLLGN
001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.