Factsheet for GSMUA_Achr1P12600_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	29.8	47.49
CDX94295	Canola	cytosol	22.35	44.07
HORVU1Hr1G093590.2	Barley	cytosol	29.51	43.28
KRH44246	Soybean	cytosol	53.87	37.68
VIT_12s0057g00740.t01	Wine grape	mitochondrion	55.3	36.42
PGSC0003DMT400015722	Potato	cytosol	53.3	35.09
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	52.44	34.53
AT4G26680.1	Thale cress	mitochondrion	51.29	34.36
TraesCS2D01G324100.1	Wheat	plastid	48.71	33.86
Os10t0363500-00	Rice	endoplasmic reticulum	49.57	33.79
HORVU2Hr1G080360.2	Barley	mitochondrion	49.28	33.59
TraesCS2B01G343000.1	Wheat	cytosol, plastid	48.14	33.47
Zm00001d030479_P001	Maize	plastid	48.14	33.33
CDX94298	Canola	mitochondrion	50.72	31.11
TraesCS2A01G339000.1	Wheat	cytosol	48.71	30.97
GSMUA_Achr8P16100_001	Banana	cytosol	19.77	25.27
GSMUA_Achr1P06500_001	Banana	cytosol	30.09	20.59
GSMUA_AchrUn_...	Banana	cytosol	24.93	19.04
GSMUA_Achr3P01360_001	Banana	mitochondrion	26.65	17.92
GSMUA_Achr11P...	Banana	cytosol	23.78	16.9
GSMUA_Achr6P34120_001	Banana	cytosol	24.07	16.9
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	28.65	16.53
GSMUA_AchrUn_...	Banana	mitochondrion	26.65	16.17
GSMUA_Achr8P04810_001	Banana	mitochondrion	32.95	15.82
GSMUA_Achr1P17710_001	Banana	cytosol	26.36	15.06
GSMUA_Achr1P22450_001	Banana	mitochondrion	23.78	14.82
GSMUA_Achr3P04340_001	Banana	cytosol	25.21	13.37
GSMUA_Achr5P09880_001	Banana	mitochondrion	25.5	13.32
Bra026410.1-P	Field mustard	mitochondrion	50.14	13.27
CDX89313	Canola	mitochondrion	50.72	13.08
GSMUA_Achr1P12220_001	Banana	mitochondrion	25.79	12.93
GSMUA_Achr8P03570_001	Banana	mitochondrion	24.93	12.89
GSMUA_Achr6P35510_001	Banana	cytosol	23.78	11.84
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	22.06	10.88

Protein Annotations

EnsemblPlants:GSMUA_Achr1P12600_001	EnsemblPlants:GSMUA_Achr1T12600_001	EnsemblPlantsGene:GSMUA_Achr1G12600_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF415	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756
UniParc:UPI0002966C2D	UniProt:M0RZB8	MapMan:35.1	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G12600_001]

Coordinates

chr1:+:9692005..9693054

Molecular Weight (calculated)

39166.5 Da

IEP (calculated)

8.242

GRAVY (calculated)

-0.226

Length

349 amino acids

Sequence
(BLAST)

001: MRDYGFLPKI KSCNAFLSSL LYLGRADVAL AFYREMHRCR ISPNVYTLNM AIRALCNSGK LDKALDLFDK MEGMGFTPTV ASFNTLIDAQ CKNGVTGHAV
101: KLKNTMAGKG LEPNVITYNT LIHGFCKESK LHEANRVFQE MKAAEVRPNT VTYNTLINGY SQMNNSEMGS RLYEEMVKDG IEVDIVTYNA LILGLCNEGK
201: TKKAAHVVKV LDQKNFVPNA STFAALITGQ CKRQNSERAL DIYKAMKRSG CTPNNDTFRL LIYTFCKNKD YEGAVELLKE MLGRYMAPDE TLLTEVFEGI
301: YSSGKTHLVT ELHLDVVGTR LIPEVYFKNE HTTKLLDISD TEAQKMCMG

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.