Factsheet for GSMUA_Achr1P06500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
peroxisome 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01780.t01	Wine grape	cytosol	58.43	53.6
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	59.02	43.56
CDY17611	Canola	cytosol	50.0	43.0
TraesCS7A01G360200.1	Wheat	mitochondrion	58.82	42.86
Os06t0565000-00	Rice	mitochondrion	58.04	42.65
Zm00001d023302_P001	Maize	mitochondrion	56.86	41.43
TraesCS7B01G267600.1	Wheat	mitochondrion	49.41	40.0
TraesCS7D01G362900.1	Wheat	mitochondrion	47.65	39.26
KRH42458	Soybean	plastid	52.75	35.82
KXG22891	Sorghum	mitochondrion	40.39	35.21
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	51.96	34.82
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	51.96	34.82
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	51.76	34.78
Bra024831.1-P	Field mustard	mitochondrion	49.8	34.7
CDY03072	Canola	mitochondrion	50.0	34.65
AT2G02150.1	Thale cress	mitochondrion, plastid	50.98	34.17
GSMUA_AchrUn_...	Banana	cytosol	28.43	31.73
GSMUA_Achr8P16100_001	Banana	cytosol	16.27	30.4
GSMUA_Achr1P12600_001	Banana	extracellular	20.59	30.09
KRH58559	Soybean	plastid	33.33	29.01
GSMUA_AchrUn_...	Banana	mitochondrion	30.59	27.13
GSMUA_Achr11P...	Banana	cytosol	26.08	27.09
GSMUA_Achr1P22450_001	Banana	mitochondrion	25.29	23.04
GSMUA_Achr8P04810_001	Banana	mitochondrion	31.18	21.87
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	25.49	21.49
GSMUA_Achr6P35510_001	Banana	cytosol	29.22	21.26
GSMUA_Achr3P01360_001	Banana	mitochondrion	20.78	20.42
GSMUA_Achr1P12220_001	Banana	mitochondrion	25.49	18.68
GSMUA_Achr6P34120_001	Banana	cytosol	18.04	18.51
GSMUA_Achr3P04340_001	Banana	cytosol	23.73	18.39
GSMUA_Achr8P03570_001	Banana	mitochondrion	24.12	18.22
GSMUA_Achr1P17710_001	Banana	cytosol	20.78	17.35
GSMUA_Achr5P09880_001	Banana	mitochondrion	20.59	15.72
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	20.59	14.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G06500_001
EnsemblPlants:GSMUA_Achr1P06500_001	EnsemblPlants:GSMUA_Achr1T06500_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0RXK8	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296B453	:

Description

Putative pentatricopeptide repeat-containing protein At2g02150 [Source:GMGC_GENE;Acc:GSMUA_Achr1G06500_001]

Coordinates

chr1:+:5187702..5189369

Molecular Weight (calculated)

57608.2 Da

IEP (calculated)

5.435

GRAVY (calculated)

-0.127

Length

510 amino acids

Sequence
(BLAST)

001: MLDEASDCFY RMRAFRILPK LRSCNNLLQR LVRTGRGELS KRFFNDIVSS NMAPTVFTFN IMIDFLCKEG DLTAARALFQ KMKEMGCLPD VITYNSLIDG
101: HGKCGELEEA EQILGEMKDS GCEPDVITYN ALVDCFCKFG KLLKAFEFLS EMKRKDIVPN VVTFSTFIDA FCKEGMMQEA LKFFVDMRVR GIRPNEFTYT
201: SLIDGNFKAG NLKEAQSLVD EMVNEGVELN VVTYTALVDG LCKEGKVLEA EGIFRAMVRA GMVPNQLMYT SLVHGHFKNK NKEKAMDLLS EMRDKGIEPD
301: ISLYGTIIWG LCNDRKIDEA KTLLKEMDYL GLKPNHVIYT TIMNACFKAG KASEALDVLH KMHDSGVLPS IVTYCFLEEA SEVFETMVGK GVAPDKFAYT
401: SLMNGYLKRG NLQKAFALKS KMIENGLELD LHAYTSLIWG FCDTGQMEEA RNTLAEMINN NIIPDEAVYN CLISKYHRLG NMDEVQSLQI DMRRRGIIPS
501: TMDDTVSNKI

Best Arabidopsis Sequence Match ( AT2G02150.2 )
(BLAST)

001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.