Factsheet for GSMUA_Achr1P12220_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G036200.1	Wheat	mitochondrion	54.74	57.04
TraesCS7A01G134800.1	Wheat	mitochondrion	55.03	56.99
Bra013432.1-P	Field mustard	cytosol	40.52	56.97
CDX78962	Canola	cytosol	40.52	56.97
CDY51888	Canola	cytosol, mitochondrion, plastid	40.37	56.88
TraesCS7D01G134400.2	Wheat	mitochondrion	54.74	56.87
Os11t0607100-01	Rice	mitochondrion	53.16	55.14
VIT_01s0011g01910.t01	Wine grape	mitochondrion	55.32	54.38
KRH40170	Soybean	mitochondrion	53.88	54.11
Zm00001d048880_P001	Maize	mitochondrion	52.44	53.99
HORVU7Hr1G028150.1	Barley	mitochondrion	38.79	53.47
AT4G19890.1	Thale cress	plastid	51.15	50.78
OQU83816	Sorghum	mitochondrion	31.75	49.77
PGSC0003DMT400026741	Potato	mitochondrion	51.15	49.72
Solyc02g068890.2.1	Tomato	mitochondrion	50.72	49.3
GSMUA_Achr8P16100_001	Banana	cytosol	12.21	31.14
GSMUA_Achr11P...	Banana	cytosol	19.11	27.09
GSMUA_Achr6P34120_001	Banana	cytosol	18.97	26.56
GSMUA_Achr1P12600_001	Banana	extracellular	12.93	25.79
GSMUA_Achr1P06500_001	Banana	cytosol	18.68	25.49
GSMUA_AchrUn_...	Banana	mitochondrion	20.98	25.39
GSMUA_AchrUn_...	Banana	cytosol	14.94	22.76
GSMUA_Achr8P04810_001	Banana	mitochondrion	23.71	22.7
GSMUA_Achr3P01360_001	Banana	mitochondrion	16.67	22.35
GSMUA_Achr8P03570_001	Banana	mitochondrion	21.26	21.93
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	18.82	21.65
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	21.98	21.61
GSMUA_Achr1P22450_001	Banana	mitochondrion	16.95	21.07
GSMUA_Achr1P17710_001	Banana	cytosol	18.25	20.79
GSMUA_Achr3P04340_001	Banana	cytosol	19.25	20.36
GSMUA_Achr6P35510_001	Banana	cytosol	20.4	20.26
GSMUA_Achr5P09880_001	Banana	mitochondrion	17.96	18.71

Protein Annotations

EnsemblPlants:GSMUA_Achr1P12220_001	EnsemblPlants:GSMUA_Achr1T12220_001	EnsemblPlantsGene:GSMUA_Achr1G12220_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF325	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000295D93B	UniProt:M0RZ80	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein At4g19895 [Source:GMGC_GENE;Acc:GSMUA_Achr1G12220_001]

Coordinates

chr1:+:9327087..9329177

Molecular Weight (calculated)

78673.3 Da

IEP (calculated)

8.519

GRAVY (calculated)

-0.179

Length

696 amino acids

Sequence
(BLAST)

001: MRLFRRLLAP HFRYYCARTN KTRPFADLGL PRQPSQDPTF TPQNPPPTVS EVCNLISQTY EDGNQKLRSL HVDLTDEQAV AAVALLAETE GSMVAFSFFR
101: WAVARPQFRH FLRFYVTAAC SLVDLGNLEK AQEVMSCMAV SFSEVGRLKE AVDMVFEMRS QGLPISIHTM NLVLRVAVGS GLIEYAEQLF AEMPANGTYP
201: NSCSFKTMIA AYCRQGRVSD VERLLRTVEE RGHGIDNVTC TLVVDAFCKK GCVSWVFRFF RKMLEIGLAP NVINYTTLID ALCKRGSVKQ GFQVLEEMVG
301: RGLKPNVYTH TALIDGLCKI GWTDRAFRLF LKLVRSNSYK PNVCTYTAMI RGYCKESKLN RAEMLLTRMR EQGLTPNTNT YTTLIDGHCK AGNLERAYEL
401: KDQMTSDSCL PNICTYNAVI HGLCKKGRIQ EAYRLLQEAS NKGLQMDKFT YTILISEHCK RDHSSRAMEL FNEMVDAGCH PDIHTYTTLI AAFCKQRNMV
501: ESERLFERCL KLELVPTKQT YTSMIGGYCR VGKVTSALRV FEKMIQHGCS ADAITYGALV SGLCKESRLD EARALYEAML DKGLVPCEVS RITLAYEYCK
601: RQKSNVALSV LERLDKKQWT RTANILVRKL GFEGHVDAAG MFINKLLDED HSIDRITYAA FINACYENNR YSTASELSER ISKGALSFVK DNSTIT

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.