Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51888 | Canola | cytosol, mitochondrion, plastid | 65.48 | 92.92 |
| CDX78962 | Canola | cytosol | 65.05 | 92.12 |
| Bra013432.1-P | Field mustard | cytosol | 65.05 | 92.12 |
| VIT_01s0011g01910.t01 | Wine grape | mitochondrion | 62.62 | 62.01 |
| KRH40170 | Soybean | mitochondrion | 60.06 | 60.75 |
| Solyc02g068890.2.1 | Tomato | mitochondrion | 57.35 | 56.15 |
| PGSC0003DMT400026741 | Potato | mitochondrion | 57.2 | 56.01 |
| GSMUA_Achr1P12220_001 | Banana | mitochondrion | 50.78 | 51.15 |
| Os11t0607100-01 | Rice | mitochondrion | 45.51 | 47.54 |
| TraesCS7D01G134400.2 | Wheat | mitochondrion | 45.22 | 47.31 |
| TraesCS7B01G036200.1 | Wheat | mitochondrion | 44.94 | 47.16 |
| TraesCS7A01G134800.1 | Wheat | mitochondrion | 45.08 | 47.02 |
| OQU83816 | Sorghum | mitochondrion | 29.67 | 46.85 |
| HORVU7Hr1G028150.1 | Barley | mitochondrion | 33.52 | 46.53 |
| Zm00001d048880_P001 | Maize | mitochondrion | 44.51 | 46.15 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 21.83 | 27.03 |
| AT2G01740.1 | Thale cress | cytosol | 19.54 | 24.51 |
| AT5G39710.1 | Thale cress | mitochondrion | 25.68 | 24.1 |
| AT1G05670.3 | Thale cress | mitochondrion | 23.97 | 22.67 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 24.11 | 22.21 |
| AT2G16880.1 | Thale cress | cytosol | 22.82 | 21.53 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 19.12 | 21.47 |
| AT2G15630.1 | Thale cress | mitochondrion | 18.97 | 21.21 |
| AT5G38730.1 | Thale cress | cytosol | 17.97 | 21.14 |
| AT5G61400.1 | Thale cress | mitochondrion | 19.12 | 20.49 |
| AT1G22960.1 | Thale cress | mitochondrion | 20.68 | 20.2 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 17.4 | 20.13 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 21.4 | 19.82 |
| AT4G26680.1 | Thale cress | mitochondrion | 14.69 | 19.77 |
| AT2G19280.1 | Thale cress | mitochondrion | 18.97 | 19.19 |
| AT5G40400.2 | Thale cress | cytosol | 18.54 | 19.09 |
| AT1G11710.1 | Thale cress | mitochondrion | 17.26 | 18.42 |
| AT1G09680.1 | Thale cress | mitochondrion | 15.12 | 17.46 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 11.13 | 16.88 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:10723133 | MapMan:35.1 | UniProt:A0A178V258 | ProteinID:AEE84242.1 | ArrayExpress:AT4G19890 |
| EnsemblPlantsGene:AT4G19890 | RefSeq:AT4G19890 | TAIR:AT4G19890 | RefSeq:AT4G19890-TAIR-G | EnsemblPlants:AT4G19890.1 | TAIR:AT4G19890.1 |
| ProteinID:CAB52870.1 | ProteinID:CAB78991.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_001190774.1 |
| ProteinID:OAO99955.1 | UniProt:P0C8Q3 | PFAM:PF01535 | PFAM:PF13041 | PO:PO:0000293 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF325 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI00018E18B6 | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
Coordinates
chr4:-:10786557..10789070
Molecular Weight (calculated)
78988.2 Da
IEP (calculated)
8.169
GRAVY (calculated)
-0.052
Length
701 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.