Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42586 | Canola | plastid | 71.66 | 78.71 |
| Bra025578.1-P | Field mustard | plastid | 71.37 | 78.01 |
| CDY50117 | Canola | plastid | 71.22 | 77.85 |
| VIT_17s0000g03060.t01 | Wine grape | plastid | 48.6 | 50.15 |
| KRH56553 | Soybean | plastid | 44.05 | 47.92 |
| PGSC0003DMT400023499 | Potato | plastid | 43.91 | 47.54 |
| Solyc03g007390.2.1 | Tomato | plastid | 44.2 | 47.4 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 21.88 | 24.59 |
| AT2G15630.1 | Thale cress | mitochondrion | 22.61 | 24.56 |
| AT4G26680.1 | Thale cress | mitochondrion | 17.18 | 22.46 |
| AT5G38730.1 | Thale cress | cytosol | 19.38 | 22.15 |
| AT1G09680.1 | Thale cress | mitochondrion | 19.09 | 21.42 |
| AT5G61400.1 | Thale cress | mitochondrion | 19.97 | 20.8 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 18.94 | 20.67 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 22.91 | 20.61 |
| AT1G11710.1 | Thale cress | mitochondrion | 19.68 | 20.4 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 16.74 | 20.14 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 13.66 | 20.13 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 22.17 | 19.84 |
| AT1G05670.3 | Thale cress | mitochondrion | 21.59 | 19.84 |
| AT5G39710.1 | Thale cress | mitochondrion | 20.7 | 18.88 |
| AT2G19280.1 | Thale cress | mitochondrion | 19.09 | 18.76 |
| AT1G22960.1 | Thale cress | mitochondrion | 19.68 | 18.66 |
| AT4G19890.1 | Thale cress | plastid | 19.09 | 18.54 |
| AT2G16880.1 | Thale cress | cytosol | 18.8 | 17.23 |
| AT2G01740.1 | Thale cress | cytosol | 13.8 | 16.82 |
| Os03t0201200-01 | Rice | nucleus | 2.2 | 6.44 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:834038 | UniProt:A0A1P8BH16 | ProteinID:AED94543.1 | EMBL:AK227121 |
| ProteinID:ANM70896.1 | ArrayExpress:AT5G40400 | EnsemblPlantsGene:AT5G40400 | RefSeq:AT5G40400 | TAIR:AT5G40400 | RefSeq:AT5G40400-TAIR-G |
| EnsemblPlants:AT5G40400.2 | Unigene:At.30286 | ProteinID:BAB11596.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 |
| RefSeq:NP_001332471.1 | RefSeq:NP_198856.2 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF657 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0008492DBF | SEG:seg |
Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
Coordinates
chr5:+:16166231..16168853
Molecular Weight (calculated)
78109.2 Da
IEP (calculated)
7.975
GRAVY (calculated)
-0.078
Length
681 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.