CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03060.t01	Wine grape	plastid	56.07	53.18
CDY42586	Canola	plastid	48.56	49.03
Bra025578.1-P	Field mustard	plastid	48.72	48.96
CDY50117	Canola	plastid	48.56	48.8
PGSC0003DMT400023499	Potato	plastid	48.56	48.33
Solyc03g007390.2.1	Tomato	plastid	48.88	48.19
AT5G40400.2	Thale cress	cytosol	47.92	44.05
KRH29211	Soybean	cytosol	24.12	25.9
KRH44246	Soybean	cytosol	20.29	25.45
KRH02112	Soybean	extracellular, mitochondrion	21.25	24.54
KRH50360	Soybean	cytosol, extracellular, plastid	21.57	24.28
KRH24548	Soybean	mitochondrion	23.96	24.08
KRH51875	Soybean	cytosol	21.57	23.77
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	17.57	23.71
KRH72966	Soybean	mitochondrion	22.84	23.25
KRH33556	Soybean	cytosol	7.67	22.97
KRH17313	Soybean	mitochondrion	17.25	22.64
KRH14574	Soybean	plastid	22.68	22.19
KRG99196	Soybean	cytosol	18.53	21.97
KRH13392	Soybean	cytosol	20.13	21.47
KRH20741	Soybean	cytosol	19.81	21.12
KRH29553	Soybean	mitochondrion	14.7	21.0
KRH18049	Soybean	plastid	23.0	20.96
KRH16451	Soybean	plastid	22.84	20.82
KRH45820	Soybean	cytosol, mitochondrion, plastid	24.6	20.75
KRH54581	Soybean	mitochondrion	17.57	20.68
KRG89236	Soybean	plastid	25.24	20.31
KRH34922	Soybean	cytosol	14.7	20.04
KRH58559	Soybean	plastid	18.53	19.8
KRG90304	Soybean	cytosol	17.57	19.61
KRH42458	Soybean	plastid	23.48	19.57
KRH49758	Soybean	plastid	21.57	19.18
KRH40170	Soybean	mitochondrion	19.49	17.6
KRG93154	Soybean	plastid	19.97	13.09
Os03t0201200-01	Rice	nucleus	1.6	4.29

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100776934	MapMan:35.1	EMBL:ACUP02002781	EnsemblPlantsGene:GLYMA_05G004200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1K1K5	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH56553	ProteinID:KRH56553	ProteinID:KRH56553.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF657	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233A892	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:343155..347113

Molecular Weight (calculated)

71158.8 Da

IEP (calculated)

6.625

GRAVY (calculated)

0.024

Length

626 amino acids

Sequence
(BLAST)

001: MIRRPSIYVP TLSQSMFFSS SSSLIALHDS HSKSTLSPFY NLLPPTQNPN NIVNLISSIL KHKSSNLSLL HSSNNDIKGI LPHMGPHEIS RILLRCQSDH
101: SSVLTFFNWV KNDLNITPTL HNYCVIVHIL AWSRVFSHAM NLLSELIQLV EVEGVCVPPN DGIYENLVEC TEDCNWNPAI FDMLIKAYVK AGMVEKGLAT
201: FRRNIEACFI PNVIACNCLL SGLSRFNYIG QCWAVYEEMG RLGIHRNAYT FNIMTHVLCK DGDTDKVTRF LDKMEEEGFE PDLVTYNTLV NSYCKKRRLE
301: DAFYLYKIMY IRGVMPNLIT HTVLMNGLCE EGKVKEAHQL FHQMVHRGID PDVVSYNTLV SGYCREGKMQ MCRSLLHEMI GNGICPDSVT CRLIVEGFAR
401: DGKLLSALNT VVELKRFRIK IPEDLYDYLI VALCIEGRPF AARSFLLRIS QDGYMPKINT YNKLVESLCK FNNVEEALIL KSEMVKRSMI LNLVAYRAVI
501: SCLCRVNRTL EAEGLLEEMV SSGILPDVEI SRALINGYCE ENKVDKAVSL LKFFANEFQV YDTESYNAVV KVFCDVGNVA ELLELQDKLL KVGYVSNRLT
601: CKYVIHGLQK AMEQDDEMLG HDMLEV

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.