CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03690.t01	Wine grape	cytosol	64.49	60.66
Bra002000.1-P	Field mustard	cytosol	32.46	49.17
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	56.64	42.55
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	56.64	42.55
GSMUA_Achr1P22450_001	Banana	mitochondrion	44.23	36.25
Solyc01g111470.2.1	Tomato	plastid	52.94	32.66
TraesCS4A01G045400.1	Wheat	plastid	49.46	30.31
CDY31404	Canola	cytosol	47.93	29.69
Os03t0201400-02	Rice	cytosol	50.11	28.89
KXG39937	Sorghum	cytosol, plastid	49.67	28.72
CDX71311	Canola	cytosol	43.57	28.61
TraesCS4D01G259600.1	Wheat	cytosol	48.8	28.39
Zm00001d028107_P001	Maize	nucleus	43.57	28.01
AT2G16880.1	Thale cress	cytosol	44.44	27.46
HORVU4Hr1G070310.1	Barley	plastid	49.02	26.91
KRH33556	Soybean	cytosol	11.98	26.32
KRH14574	Soybean	plastid	31.37	22.5
KRG99196	Soybean	cytosol	22.66	19.7
KRH54581	Soybean	mitochondrion	22.66	19.55
KRH17313	Soybean	mitochondrion	18.74	18.03
KRH16451	Soybean	plastid	26.8	17.9
KRH18049	Soybean	plastid	26.8	17.9
KRH24548	Soybean	mitochondrion	23.97	17.66
KRH40170	Soybean	mitochondrion	25.49	16.88
KRH50360	Soybean	cytosol, extracellular, plastid	20.26	16.73
KRH51875	Soybean	cytosol	20.7	16.73
KRH02112	Soybean	extracellular, mitochondrion	19.61	16.61
KRG89236	Soybean	plastid	27.67	16.32
KRH29553	Soybean	mitochondrion	15.47	16.21
KRH45820	Soybean	cytosol, mitochondrion, plastid	26.14	16.17
KRH29211	Soybean	cytosol	20.48	16.12
KRH13392	Soybean	cytosol	20.26	15.84
KRH49758	Soybean	plastid	24.18	15.77
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	15.69	15.52
KRH20741	Soybean	cytosol	19.83	15.5
KRH42458	Soybean	plastid	24.62	15.05
KRH72966	Soybean	mitochondrion	20.04	14.96
KRH56553	Soybean	plastid	20.04	14.7
KRG90304	Soybean	cytosol	17.43	14.26
KRH58559	Soybean	plastid	17.43	13.65
KRH44246	Soybean	cytosol	13.51	12.42
KRG93154	Soybean	plastid	23.53	11.31

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0I4Y2	EMBL:ACUP02006644	EnsemblPlantsGene:GLYMA_10G2136001	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:KRH34920.1	ProteinID:KRH34921.1
EnsemblPlants:KRH34922	ProteinID:KRH34922	ProteinID:KRH34922.1	ProteinID:KRH34923.1	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF871	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006EE083D	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:44622474..44625898

Molecular Weight (calculated)

52370.4 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.396

Length

459 amino acids

Sequence
(BLAST)

001: DVWTYNTLVK GLCDEGKIDE AIRVRDEMES LKLIPDVVTY NTLIDGCFKW RGSTEGFRLL EEMKSRGGVE PNAVTHNIMV KWFGKEGKIN EASDAVVKMV
101: ESGVSPDCFT YNTMINGFCK AGKLGEAFRM MDEMARKGLK PDICTLNTML HTLCMEKKPE EAYELTVKAR KRGYILDEVT YGTLIMGYFK GKQEDKALKL
201: WEEMKKRGIV PSVVSYNPLI RGLCLSGKTD QAVDKLNELL EKGLVPDEVS CNIIIHGYCW EGMVDKAFQF HNKMVGNSFK PDIFTRNILL RGLCRVDMLE
301: KAFKLFNSWI SKQNSVDVVT YNTMISYLCK EGRLDEAFDL MTDMEVKKFE PDQYTYNAIV RALTHAGRTE EAEKFMSKLS ETGQAVKTHD TSQELDASSD
401: IMYSQQISDL CTQGKYKEAM KLFQESEQKG VSLNKYTYIK LMDGFLKRRK SISKVDHAN

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.