CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50360	Soybean	cytosol, extracellular, plastid	94.65	92.27
KRH51875	Soybean	cytosol	94.65	90.32
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	65.31	76.29
VIT_06s0004g04770.t01	Wine grape	plastid	57.93	55.77
PGSC0003DMT400058577	Potato	plastid	53.32	51.52
AT4G11690.1	Thale cress	endoplasmic reticulum	50.74	48.59
Bra040883.1-P	Field mustard	endoplasmic reticulum	50.37	47.48
CDY57780	Canola	endoplasmic reticulum	50.18	47.3
CDX86757	Canola	endoplasmic reticulum, extracellular	49.63	46.78
Zm00001d042911_P001	Maize	mitochondrion, plastid	31.55	41.71
OQU87837	Sorghum	plastid	31.18	41.22
Os05t0583950-00	Rice	mitochondrion	31.0	40.98
TraesCS3D01G353400.1	Wheat	cytosol	29.52	39.02
GSMUA_Achr6P34120_001	Banana	cytosol	35.61	38.83
HORVU3Hr1G086290.19	Barley	plastid	28.97	38.57
TraesCS3A01G359100.1	Wheat	cytosol	28.6	37.8
KRH29211	Soybean	cytosol	26.75	24.87
KRH24548	Soybean	mitochondrion	28.04	24.4
KRH72966	Soybean	mitochondrion	26.75	23.58
KRH17313	Soybean	mitochondrion	20.66	23.48
KRG99196	Soybean	cytosol	21.96	22.54
KRH44246	Soybean	cytosol	20.66	22.44
KRH33556	Soybean	cytosol	8.49	22.01
KRH29553	Soybean	mitochondrion	17.53	21.69
KRH18049	Soybean	plastid	27.49	21.69
KRH14574	Soybean	plastid	25.46	21.56
KRH56553	Soybean	plastid	24.54	21.25
KRH16451	Soybean	plastid	26.75	21.11
KRH20741	Soybean	cytosol	22.51	20.78
KRH54581	Soybean	mitochondrion	20.3	20.68
KRG89236	Soybean	plastid	28.97	20.18
KRH13392	Soybean	cytosol	21.77	20.1
KRH34922	Soybean	cytosol	16.61	19.61
KRH45820	Soybean	cytosol, mitochondrion, plastid	26.57	19.41
KRH49758	Soybean	plastid	24.91	19.18
KRH58559	Soybean	plastid	20.66	19.11
KRG90304	Soybean	cytosol	19.74	19.07
KRH40170	Soybean	mitochondrion	24.35	19.05
KRH42458	Soybean	plastid	25.09	18.11
KRG93154	Soybean	plastid	22.69	12.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02010293	EnsemblPlantsGene:GLYMA_17G016400	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0080156	GO:GO:0090305
UniProt:I1MR84	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH02112	ProteinID:KRH02112	ProteinID:KRH02112.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002959E6E	:	:

Description

hypothetical protein

Coordinates

chr17:+:1221932..1223871

Molecular Weight (calculated)

60618.6 Da

IEP (calculated)

8.924

GRAVY (calculated)

0.121

Length

542 amino acids

Sequence
(BLAST)

001: MSQSHKALIL IQKMVKVPPI KTLLLFNTAS YQGLHHTSHS ISFILNHLLS SGMLPQAQSL ILRLISGRIP SSLMLQLTQA HFTSCSTYTP LYDAIVNAYV
101: HSHSTDQALT FLHHMIHEGH APLSNTFNNL LCLLIRSNYF DKAWWIFNVL KSKVVLNAYS FGIMITGCCE AGYFVRVFRL LAVLEEFGLS PNVVIYTTLI
201: DGCCKNGDVM LAKNLFCKMD RLGLVPNQHT YSVLMNGFFK QGLQREGFQM YENMNRSGIV PNAYAYNCLI SEYCNDGMVD KAFKVFAEMR EKGIACGVMT
301: YNILIGGLCR GKKFGEAVKL VHKVNKVGLS PNIVTYNILI NGFCDVGKMD TAVRLFNQLK SSGLSPTLVT YNTLIAGYSK VENLAGALDL VKEMEERCIA
401: RSKVTYTILI DAFARLNYTD KACEMHSLME KSGLVPDVYT YKASKPFKSL GEMHLQPNSV IYNTMIHGYC KEGSSYRALR LLNEMVHSGM VPNVASFCST
501: MGLLCRDEKW KEAELLLGQM INSGLKPSVS LYKMVHKVKG DV

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.