CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33556	Soybean	cytosol	25.13	67.46
KRG93154	Soybean	plastid	84.49	49.63
VIT_08s0040g01530.t01	Wine grape	cytosol	47.24	42.74
HORVU2Hr1G019920.1	Barley	cytosol	27.27	40.91
Bra022891.1-P	Field mustard	plastid	43.67	39.9
CDX84733	Canola	plastid	43.67	39.9
GSMUA_Achr11P...	Banana	cytosol	34.58	39.51
CDX79463	Canola	plastid	43.32	39.38
AT2G32630.1	Thale cress	mitochondrion, plastid	43.67	39.26
EER99880	Sorghum	cytosol	32.98	38.7
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	35.83	37.43
TraesCS2A01G114800.1	Wheat	plastid	35.47	36.99
TraesCS2B01G133900.1	Wheat	plastid	35.29	36.8
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	35.12	36.69
PGSC0003DMT400027103	Potato	cytosol	26.74	36.67
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	33.87	36.47
Os07t0671200-00	Rice	extracellular	35.65	36.3
Solyc10g084080.1.1	Tomato	cytosol, extracellular	32.26	35.28
TraesCS2D01G115600.1	Wheat	cytosol, plastid	35.29	33.85
HORVU2Hr1G019880.2	Barley	cytosol	21.39	33.33
PGSC0003DMT400027098	Potato	cytosol	26.92	24.43
PGSC0003DMT400027113	Potato	cytosol, plastid	41.53	23.07
KRH29211	Soybean	cytosol	23.53	22.64
KRG99196	Soybean	cytosol	21.03	22.35
KRH54581	Soybean	mitochondrion	20.32	21.43
KRH17313	Soybean	mitochondrion	18.0	21.17
KRH24548	Soybean	mitochondrion	23.17	20.87
KRH72966	Soybean	mitochondrion	22.82	20.81
KRH16451	Soybean	plastid	24.24	19.8
KRH02112	Soybean	extracellular, mitochondrion	19.07	19.74
KRH18049	Soybean	plastid	24.06	19.65
KRH50360	Soybean	cytosol, extracellular, plastid	19.43	19.6
KRH51875	Soybean	cytosol	19.79	19.54
Solyc10g084090.1.1	Tomato	cytosol	45.81	19.22
KRH14574	Soybean	plastid	21.93	19.22
KRH13392	Soybean	cytosol	19.96	19.08
KRH58559	Soybean	plastid	19.61	18.77
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	15.51	18.75
KRH45820	Soybean	cytosol, mitochondrion, plastid	24.78	18.73
KRH29553	Soybean	mitochondrion	14.44	18.49
KRH20741	Soybean	cytosol	19.25	18.4
KRH42458	Soybean	plastid	24.42	18.24
KRH44246	Soybean	cytosol	16.04	18.04
KRH56553	Soybean	plastid	19.61	17.57
KRH34922	Soybean	cytosol	14.26	17.43
KRH40170	Soybean	mitochondrion	21.39	17.32
KRG89236	Soybean	plastid	22.64	16.32
KRH49758	Soybean	plastid	19.25	15.34

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0E9E0	EMBL:ACUP02012597	EnsemblPlantsGene:GLYMA_20G081700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG90304	ProteinID:KRG90304	ProteinID:KRG90304.1	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0006ED734D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:30791310..30794431

Molecular Weight (calculated)

63902.9 Da

IEP (calculated)

6.123

GRAVY (calculated)

-0.135

Length

561 amino acids

Sequence
(BLAST)

001: MNWRKKTNVF PSPEDPLENP QQIHLLPSSN PTTPPTRPHH NPYPPQQPLF QTPPLLDPLH LTPRHLPCPL RPHPPPPLSC LTFFHFLPSP DLNARLILLY
101: RLFAARKFAA MRTLLDSLVT TEVETKRPVS DVVSLVDECE FEPHFVETLC DMLFRVCADN RMFRDALKVF DYVMEKGLVV ELCVRFFRRM VESGRVDIGV
201: QSLTIVVDVL CRRGEVGRAK ELMNEMAARG VVPTVFTYNT LLNACVVRKD REGVDEILGL MEREGVVASL VTYTILIEWY ASSERIGEAE KVYEEMCERN
301: VEMDVYVYTS MISWNCRAGN VRRASALFDE MICRGIAGQM EAAEILLEEM QCKGVDLNVV IFNTMMDGYC KRGMMDEAFR LQDIMERKGF EADVFTYNIL
401: ASGLCKLHRY EEAKRVLNVM VEKGVAPNVV TCATFIEIYC QEGNLAEPER FLRNIEKRGV VPNIVTYNTL IDAYSKNEKV KQAHVDEALK LFNEMLVKGI
501: RGNVKTYTAI ISGLSKEGRA DEALKLYDEM MRMGLIPDDR VFEALVGSLH KPSSHAALKQ N

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.