Factsheet for PGSC0003DMT400027103

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084080.1.1	Tomato	cytosol, extracellular	92.18	73.49
KRH33556	Soybean	cytosol	24.21	47.37
HORVU2Hr1G019920.1	Barley	cytosol	38.88	42.51
EER99880	Sorghum	cytosol	41.32	35.36
HORVU2Hr1G019880.2	Barley	cytosol	31.05	35.28
GSMUA_Achr11P...	Banana	cytosol	41.32	34.42
VIT_08s0040g01530.t01	Wine grape	cytosol	49.14	32.42
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	41.08	31.28
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	40.1	30.54
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	38.39	30.13
Os07t0671200-00	Rice	extracellular	39.85	29.58
TraesCS2A01G114800.1	Wheat	plastid	38.39	29.18
TraesCS2B01G133900.1	Wheat	plastid	38.14	29.0
Bra022891.1-P	Field mustard	plastid	40.34	26.87
CDX84733	Canola	plastid	40.34	26.87
TraesCS2D01G115600.1	Wheat	cytosol, plastid	38.39	26.84
CDX79463	Canola	plastid	40.34	26.74
KRG90304	Soybean	cytosol	36.67	26.74
AT2G32630.1	Thale cress	mitochondrion, plastid	39.12	25.64
PGSC0003DMT400027098	Potato	cytosol	37.41	24.76
PGSC0003DMT400027113	Potato	cytosol, plastid	59.17	23.96
PGSC0003DMT400024895	Potato	cytosol	25.92	23.14
PGSC0003DMT400034430	Potato	cytosol	26.65	22.71
PGSC0003DMT400058577	Potato	plastid	25.92	18.89
KRG93154	Soybean	plastid	43.28	18.53
PGSC0003DMT400007278	Potato	mitochondrion	25.67	17.36
PGSC0003DMT400066275	Potato	cytosol	13.2	16.62
PGSC0003DMT400078379	Potato	cytosol	27.14	16.04
PGSC0003DMT400066731	Potato	mitochondrion, plastid	24.21	16.02
PGSC0003DMT400026741	Potato	mitochondrion	27.87	15.92
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	23.72	15.88
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	23.72	15.88
PGSC0003DMT400058276	Potato	mitochondrion	27.38	14.89
PGSC0003DMT400003372	Potato	mitochondrion	26.16	14.66
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	25.67	13.8
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	25.67	13.8
PGSC0003DMT400066369	Potato	mitochondrion	24.45	13.04
PGSC0003DMT400023499	Potato	plastid	20.05	13.04
PGSC0003DMT400015722	Potato	cytosol	16.14	12.45
PGSC0003DMT400040701	Potato	mitochondrion	15.89	11.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400027103	EnsemblPlantsGene:PGSC0003DMG402010456	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PGSC:PGSC0003DMG402010456	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0002965B0B	UniProt:M1AP68	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402010456]

Coordinates

chr10:-:55019128..55027797

Molecular Weight (calculated)

45852.3 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.285

Length

409 amino acids

Sequence
(BLAST)

001: MEKEGWDFDP KSYTLLIKRY STFGEFGEMK RLFMEIEEKG VKPDVHLYTS MISGYCKLGN VRKAYQVFDE MTERGLVPDG HTYGALINGL CKAGLMQEAE
101: VLVNEMQSKG IWINRAIFNT MMDGYCKQGN VDEALRLQRI MEDEGHEPDA NAYNIIATGL RKLDLHDEAK RLLLSMVDRG VAPNVLAYTS LIDIYCKQGD
201: FFEAKRILSE METKGIKPST GTYNALIDGY FKHGNFIEAK RALIEMETKG VKPNTTTYTA LIDGYCKQGD FVKAKRTLIE MESNGVMPNT NTYTALIDGY
301: CQKGMMNEAY KLRIVMESKD LIPNVYTYTS LVHGECKSGN VDDALKLFNE MPTKGLVPNV VTYTAVISGL SKEGRSGETL RLYNQMIEAG VIPDAAAYSA
401: LSFLTGQLE

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.