Factsheet for PGSC0003DMT400066275

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066369	Potato	mitochondrion	92.0	38.98
OQU75844	Sorghum	cytosol	46.15	27.22
Os06t0152500-00	Rice	plastid	48.92	22.91
TraesCS7A01G109000.1	Wheat	plastid	48.62	22.73
TraesCS7D01G103900.1	Wheat	plastid	48.0	22.45
Zm00001d010121_P001	Maize	plastid	47.69	22.43
Zm00001d045319_P001	Maize	plastid	47.38	22.29
GSMUA_Achr3P04340_001	Banana	cytosol	44.0	21.73
TraesCS7B01G006900.1	Wheat	plastid	46.46	21.73
HORVU7Hr1G023200.23	Barley	cytosol	46.15	21.61
PGSC0003DMT400024895	Potato	cytosol	21.23	15.07
PGSC0003DMT400027103	Potato	cytosol	16.62	13.2
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	20.92	11.13
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	20.92	11.13
PGSC0003DMT400078379	Potato	cytosol	22.46	10.55
PGSC0003DMT400003372	Potato	mitochondrion	21.54	9.59
PGSC0003DMT400034430	Potato	cytosol	14.15	9.58
PGSC0003DMT400066731	Potato	mitochondrion, plastid	17.85	9.39
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	21.23	9.07
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	21.23	9.07
PGSC0003DMT400058276	Potato	mitochondrion	20.0	8.64
PGSC0003DMT400058577	Potato	plastid	14.46	8.38
PGSC0003DMT400026741	Potato	mitochondrion	18.15	8.24
PGSC0003DMT400007278	Potato	mitochondrion	13.54	7.27
PGSC0003DMT400027113	Potato	cytosol, plastid	17.85	5.74
PGSC0003DMT400023499	Potato	plastid	11.08	5.72
PGSC0003DMT400015722	Potato	cytosol	4.62	2.83
PGSC0003DMT400027098	Potato	cytosol	3.08	1.62
PGSC0003DMT400040701	Potato	mitochondrion	2.46	1.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400066275	EnsemblPlantsGene:PGSC0003DMG402025785	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG402025785	TIGRFAMs:TIGR00756	UniParc:UPI000296ADDB
UniProt:M1CFA3	MapMan:35.1	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402025785]

Coordinates

chr1:+:84426772..84434967

Molecular Weight (calculated)

36678.9 Da

IEP (calculated)

7.958

GRAVY (calculated)

-0.086

Length

325 amino acids

Sequence
(BLAST)

001: MEDALRVTQE MEQRRLVPDV VSYSTIISGF CRNCGLGRAF CVKQQMVEKG VLPDVITYSS LIQGLYEKQR LTEVCELFQE MLRVGLQPDK FTYTTLIGAY
101: CANGDIKGAF HLHNKMIYKG LFPDVVTYNV LINGLNKQAR TREAKRLLFK LLYEQSVPNS VTYAMLIESC KDLELKSAVD LIKGFCMKGL LNEADQVFEL
201: MLQKHKKPSE VAYNLLIHGH SRSGNLHRAL NPFQRNGLSW IFSHTVSIIV LMKDILKKGM SEELHQVIQS TLETCKVADG ELAKVIVEVN YNEGNMDAVF
301: NALTEMAKDG LLPNSGKTAF CHMPQ

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.