Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043860 | Potato | endoplasmic reticulum, golgi | 100.0 | 100.0 |
| Solyc02g021280.1.1 | Tomato | endoplasmic reticulum | 96.06 | 96.31 |
| VIT_01s0010g01780.t01 | Wine grape | cytosol | 45.86 | 62.77 |
| GSMUA_Achr1P06500_001 | Banana | cytosol | 34.82 | 51.96 |
| KRH42458 | Soybean | plastid | 50.72 | 51.4 |
| CDY17611 | Canola | cytosol | 39.95 | 51.26 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 50.2 | 50.2 |
| Bra024831.1-P | Field mustard | mitochondrion | 48.23 | 50.14 |
| CDY03072 | Canola | mitochondrion | 47.83 | 49.46 |
| KRH58559 | Soybean | plastid | 36.66 | 47.61 |
| Os06t0565000-00 | Rice | mitochondrion | 38.5 | 42.22 |
| TraesCS7A01G360200.1 | Wheat | mitochondrion | 38.76 | 42.14 |
| TraesCS7D01G362900.1 | Wheat | mitochondrion | 33.9 | 41.68 |
| HORVU7Hr1G087760.14 | Barley | cytosol, mitochondrion | 37.19 | 40.96 |
| TraesCS7B01G267600.1 | Wheat | mitochondrion | 33.9 | 40.95 |
| Zm00001d023302_P001 | Maize | mitochondrion | 36.66 | 39.86 |
| KXG22891 | Sorghum | mitochondrion | 25.89 | 33.68 |
| PGSC0003DMT400024895 | Potato | cytosol | 18.53 | 30.79 |
| PGSC0003DMT400034430 | Potato | cytosol | 17.74 | 28.12 |
| PGSC0003DMT400066731 | Potato | mitochondrion, plastid | 22.6 | 27.83 |
| PGSC0003DMT400007278 | Potato | mitochondrion | 21.42 | 26.94 |
| PGSC0003DMT400058276 | Potato | mitochondrion | 26.15 | 26.46 |
| PGSC0003DMT400003372 | Potato | mitochondrion | 25.36 | 26.44 |
| PGSC0003DMT400066369 | Potato | mitochondrion | 26.28 | 26.08 |
| PGSC0003DMT400078379 | Potato | cytosol | 23.52 | 25.87 |
| PGSC0003DMT400027103 | Potato | cytosol | 13.8 | 25.67 |
| PGSC0003DMT400015722 | Potato | cytosol | 17.74 | 25.47 |
| PGSC0003DMT400015805 | Potato | endoplasmic reticulum, extracellular | 20.24 | 25.2 |
| PGSC0003DMT400015807 | Potato | endoplasmic reticulum, extracellular | 20.24 | 25.2 |
| PGSC0003DMT400058577 | Potato | plastid | 18.53 | 25.13 |
| PGSC0003DMT400026741 | Potato | mitochondrion | 23.13 | 24.58 |
| PGSC0003DMT400023499 | Potato | plastid | 19.19 | 23.21 |
| PGSC0003DMT400066275 | Potato | cytosol | 9.07 | 21.23 |
| PGSC0003DMT400040701 | Potato | mitochondrion | 15.24 | 21.09 |
| PGSC0003DMT400027098 | Potato | cytosol | 12.88 | 15.86 |
| PGSC0003DMT400027113 | Potato | cytosol, plastid | 20.11 | 15.15 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M1BFA6 | PFAM:PF01535 |
| PFAM:PF13041 | EnsemblPlantsGene:PGSC0003DMG402017024 | PGSC:PGSC0003DMG402017024 | EnsemblPlants:PGSC0003DMT400043863 | PFscan:PS51375 | PANTHER:PTHR44149 |
| PANTHER:PTHR44149:SF1 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | TMHMM:TMhelix | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0002966A0F | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402017024]
Coordinates
chr2:-:11089472..11096640
Molecular Weight (calculated)
86389.5 Da
IEP (calculated)
6.736
GRAVY (calculated)
0.053
Length
761 amino acids
Sequence
(BLAST)
(BLAST)
001: MESITEAILF YFAMLIFVRG LLGITFRKSD RVSHFSPATF TPFPQNLFFF VNNFLCLFSY PFSTNTSNTF LNANSIKNII REEKWEDDIR IARLFDSALA
101: PIWVSEILLA LKQDPRLVLR FFKWAKTQTD FYHTAEGYCI VAHILFYSRM YSDTYDVLKE LVTLSNDKKV LPCSDVLDVL WSTRNACKPG YGVFDALFSV
201: LIELGLLKEA SECFLRMRSF RVLPKARSCN YLLHRFSKLG DKNSSLKFFD DMIESGIVPT VYTYNIMIDY LCKDGDLNAA KRLFAQMKDI GIDPDIVTYN
301: SLIDGIGKHG ELEDMVSIYK EMKKSKCLPD VVTYNTLINC FCRSGRMAIA FEYLHEMKRG GLKPNVITYS IFIDVFAKEG MLQGAIKFFV DMRRVGLAPN
401: EFAYTSLIDA HFKVSKVDEA LKLVKEMLEV GVKLNVVTYA TLVDGLCNAG SIKEAEEVFR VMLKDGIVPN LEVYTALIHG YIKSKRLVDA LNILEQMKEN
501: NIRPDTLLYG IVLWSFCSDE KFEEAKVLFD KMKGLGIEGN YVIYTILADA YFKAGKYVEA QALLNEMQER GISPTVVTYS ALIDGLCRLG FVQEAMDHFH
601: SMPKMGLQPN VVAYTALIHG LCRNKCLEAA EKMFNEMLGK GIHPDKIVYT SLIDGNLKQG NIQDALDLRR RMTGSGLELD LHAYTALICG LSKNGQVPQA
701: RSFFDEMIEK GVKPDEVVFS CLIRKYQEIG NLEEVLALQN EMMKRGLTTV TSDVAVHNMQ T
101: PIWVSEILLA LKQDPRLVLR FFKWAKTQTD FYHTAEGYCI VAHILFYSRM YSDTYDVLKE LVTLSNDKKV LPCSDVLDVL WSTRNACKPG YGVFDALFSV
201: LIELGLLKEA SECFLRMRSF RVLPKARSCN YLLHRFSKLG DKNSSLKFFD DMIESGIVPT VYTYNIMIDY LCKDGDLNAA KRLFAQMKDI GIDPDIVTYN
301: SLIDGIGKHG ELEDMVSIYK EMKKSKCLPD VVTYNTLINC FCRSGRMAIA FEYLHEMKRG GLKPNVITYS IFIDVFAKEG MLQGAIKFFV DMRRVGLAPN
401: EFAYTSLIDA HFKVSKVDEA LKLVKEMLEV GVKLNVVTYA TLVDGLCNAG SIKEAEEVFR VMLKDGIVPN LEVYTALIHG YIKSKRLVDA LNILEQMKEN
501: NIRPDTLLYG IVLWSFCSDE KFEEAKVLFD KMKGLGIEGN YVIYTILADA YFKAGKYVEA QALLNEMQER GISPTVVTYS ALIDGLCRLG FVQEAMDHFH
601: SMPKMGLQPN VVAYTALIHG LCRNKCLEAA EKMFNEMLGK GIHPDKIVYT SLIDGNLKQG NIQDALDLRR RMTGSGLELD LHAYTALICG LSKNGQVPQA
701: RSFFDEMIEK GVKPDEVVFS CLIRKYQEIG NLEEVLALQN EMMKRGLTTV TSDVAVHNMQ T
001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M
Arabidopsis Description
Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.