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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 3
  • extracellular 4
  • endoplasmic reticulum 6
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400043860 Potato endoplasmic reticulum, golgi 96.31 96.06
PGSC0003DMT400043863 Potato endoplasmic reticulum, golgi 96.31 96.06
VIT_01s0010g01780.t01 Wine grape cytosol 45.98 62.77
GSMUA_Achr1P06500_001 Banana cytosol 34.78 51.76
KRH42458 Soybean plastid 50.86 51.4
CDY17611 Canola cytosol 39.92 51.1
AT2G02150.1 Thale cress mitochondrion, plastid 50.33 50.2
Bra024831.1-P Field mustard mitochondrion 48.22 50.0
CDY03072 Canola mitochondrion 48.22 49.73
KRH58559 Soybean plastid 36.76 47.61
Os06t0565000-00 Rice mitochondrion 38.21 41.79
TraesCS7A01G360200.1 Wheat mitochondrion 38.47 41.71
TraesCS7D01G362900.1 Wheat mitochondrion 33.73 41.36
HORVU7Hr1G087760.14 Barley cytosol, mitochondrion 37.02 40.67
TraesCS7B01G267600.1 Wheat mitochondrion 33.73 40.63
Zm00001d023302_P001 Maize mitochondrion 36.36 39.43
KXG22891 Sorghum mitochondrion 25.43 32.99
Solyc11g011410.1.1 Tomato cytosol 17.65 27.92
Solyc01g109060.2.1 Tomato mitochondrion 22.4 27.51
Solyc01g100450.1.1 Tomato mitochondrion 20.95 26.28
Solyc01g108410.1.1 Tomato mitochondrion 25.96 25.68
Solyc05g008560.1.1 Tomato mitochondrion 24.77 24.93
Solyc07g047620.1.1 Tomato cytosol, mitochondrion 17.26 24.72
Solyc10g084080.1.1 Tomato cytosol, extracellular 16.6 24.56
Solyc04g050550.1.1 Tomato cytosol 18.71 24.15
Solyc02g068890.2.1 Tomato mitochondrion 22.53 23.88
Solyc01g111470.2.1 Tomato plastid 23.19 23.66
Solyc03g007390.2.1 Tomato plastid 19.37 23.15
Solyc06g010270.1.1 Tomato mitochondrion 12.52 20.52
Solyc06g069700.2.1 Tomato plastid 21.61 20.35
Solyc10g084090.1.1 Tomato cytosol 21.34 12.12
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451GO:GO:0009987
GO:GO:0016787GO:GO:0043231GO:GO:0090305InterPro:IPR002885InterPro:IPR011990UniProt:K4B4X8
PFAM:PF01535PFAM:PF13041PFAM:PF13812PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF329
InterPro:Pentatricopeptide_repeatSUPFAM:SSF81901EnsemblPlantsGene:Solyc02g021280.1EnsemblPlants:Solyc02g021280.1.1TIGRFAMs:TIGR00756TMHMM:TMhelix
InterPro:TPR-like_helical_dom_sfUniParc:UPI000276880F::::
Description
No Description!
Coordinates
chr2:-:22401521..22403800
Molecular Weight (calculated)
86228.4 Da
IEP (calculated)
6.984
GRAVY (calculated)
0.046
Length
759 amino acids
Sequence
(BLAST)
001: MESITEATLF YLAMLIFVRG LLGITFRKSD RVSHFSSPTY TPLIPFFFVN NFLCLFRYPF STNTSNTFLD ANSIKNIIRE EKWEDDIRIA RLFDSALAPL
101: WVSQILLALK QDPRLVLRFF KWAKTQTDFY HTAEGYCIVA HILFYSRMYS DTYDVLKELV TLSNDKKVLP CSDVLDVLWS TRNACKPGYG VFDALFSVLI
201: EMGLLKEASD CFLRMRSFRV LPKARSCNYL LHRFSKLGDK NSSLKFFDDM IESGIVPTVY TYNIMIDYLC KDGDLNAAKR LFTQMKDIGI DPDIVTYNSL
301: IDGIGKHGEL EDMVSIYEEM KKSKCLPDVV TYNTLINCFC RSGRMAVAFE YLHEMKRSGL KPNLITYSIF IDVFAKEGML QGAIKFFVDM RRVGLAPNEF
401: AYTSLIDAHF KVSKVDEALK LVKEMLEVGV KLNVVTYATL VNGLCNAGNI KEAEEVFRVM LKDGIVPNLE VYTALIHGYI KSKRLVDALN ILEQMKENNI
501: KPDTLLYGVV LWSFCSDKKF EEAKVLFDKM KGLGIEGNYV IYTIFADAYF KAGKSVEAQA LLNEMQERGI SPTVVTYSAL IDGLCRLGFV QEAMDHFHSM
601: PKMGLQPNVV AYTALIHGLC RNKCLEAADK MFNEMLGKGI HPDKIVYTSL IDGNLKQGNI QDALDLRRRM TVIGLELDLH AYTALICGLS KNGQVPQARS
701: FFDEMIEKGV KPDEVVFSCL IRKYQEIGNL EEVLALQNEM MKRGLTTVTS DVAVHNMQT
Best Arabidopsis Sequence Match ( AT2G02150.2 )
(BLAST)
001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M
Arabidopsis Description
Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.