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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023499 Potato plastid 92.44 93.32
VIT_17s0000g03060.t01 Wine grape plastid 55.59 53.48
CDY42586 Canola plastid 48.19 49.35
CDY50117 Canola plastid 48.19 49.12
KRH56553 Soybean plastid 48.19 48.88
Bra025578.1-P Field mustard plastid 47.72 48.64
AT5G40400.2 Thale cress cytosol 47.4 44.2
Solyc11g011410.1.1 Tomato cytosol 19.53 25.83
Solyc01g100450.1.1 Tomato mitochondrion 23.78 24.96
Solyc07g047620.1.1 Tomato cytosol, mitochondrion 20.32 24.34
Solyc04g050550.1.1 Tomato cytosol 21.26 22.96
Solyc01g109060.2.1 Tomato mitochondrion 22.2 22.82
Solyc02g021280.1.1 Tomato endoplasmic reticulum 23.15 19.37
Solyc01g108410.1.1 Tomato mitochondrion 22.99 19.04
Solyc10g084080.1.1 Tomato cytosol, extracellular 14.96 18.52
Solyc01g111470.2.1 Tomato plastid 21.42 18.28
Solyc02g068890.2.1 Tomato mitochondrion 19.84 17.6
Solyc05g008560.1.1 Tomato mitochondrion 20.63 17.37
Solyc06g010270.1.1 Tomato mitochondrion 12.6 17.28
Solyc06g069700.2.1 Tomato plastid 20.0 15.76
Solyc10g084090.1.1 Tomato cytosol 18.74 8.9
Os03t0201200-01 Rice nucleus 2.83 7.73
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451GO:GO:0009987
GO:GO:0016787GO:GO:0043231GO:GO:0090305InterPro:IPR002885InterPro:IPR011990UniProt:K4BEG2
PFAM:PF13041PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF657InterPro:Pentatricopeptide_repeatEnsemblPlantsGene:Solyc03g007390.2
EnsemblPlants:Solyc03g007390.2.1TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI0002768143SEG:seg:
Description
No Description!
Coordinates
chr3:+:1934183..1937655
Molecular Weight (calculated)
72191.6 Da
IEP (calculated)
7.981
GRAVY (calculated)
-0.089
Length
635 amino acids
Sequence
(BLAST)
001: MNLTQKSIKS TCSNVELLIN FNNRLNFSSL SSSNCLQILT DYNGSARPIS NPLHNFLPKT QNPQNTVSLI CSALKNGNND HLSLLQKTIR DNGLICYFSD
101: SEISRVLLRC QSDSFSALSF FNWVKNDLGV EPNTQNYCLV IHILTWTRNF SQAMKFLSEL VDLKRNGMED VDVFESLLSS SGLCNWDPVV FDMLIKAFLK
201: VNMVKDGFRA FRKTVKHGMY PSVISVNCLL NGLSKLNYSK KCWEVYAEMG RIGVHPNSCT FNILTHVLCK DEDVNKVNDF LVKMEEEGFQ PDIVTYNTLV
301: SSYCRKGRMK DAVHLYQIMY IRGVSPDLFT YTSLINGFCK KGNVKDAHQL FLRMADRGLK PDIIVYNTLI SGYCKDGMMQ EARSLLHDMI GEGMYPDKFT
401: CSVLVQGFQK QDNLVSAVNL VTELQRFRFI VSHDIYNYLI TALCIENRPF AAKALIHRVS GDRYEPGNMV YGELIESFCR CNFPDEALCL KAEMVSKDLK
501: PDIGTYRAII KCLCKLGRSM DANSLMREMT DFDVSLDIEV CRALINGHCR ENNFCEAQSL LSFFAQEFKI FDTVCYNTIV RLLSGEADIA KLMKFQDKMR
601: KVGFAPNQLT CKYIIDGLQK AVGVHKINSA WIHTS
Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)
001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
Arabidopsis Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.