Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400023499 | Potato | plastid | 92.44 | 93.32 |
VIT_17s0000g03060.t01 | Wine grape | plastid | 55.59 | 53.48 |
CDY42586 | Canola | plastid | 48.19 | 49.35 |
CDY50117 | Canola | plastid | 48.19 | 49.12 |
KRH56553 | Soybean | plastid | 48.19 | 48.88 |
Bra025578.1-P | Field mustard | plastid | 47.72 | 48.64 |
AT5G40400.2 | Thale cress | cytosol | 47.4 | 44.2 |
Solyc11g011410.1.1 | Tomato | cytosol | 19.53 | 25.83 |
Solyc01g100450.1.1 | Tomato | mitochondrion | 23.78 | 24.96 |
Solyc07g047620.1.1 | Tomato | cytosol, mitochondrion | 20.32 | 24.34 |
Solyc04g050550.1.1 | Tomato | cytosol | 21.26 | 22.96 |
Solyc01g109060.2.1 | Tomato | mitochondrion | 22.2 | 22.82 |
Solyc02g021280.1.1 | Tomato | endoplasmic reticulum | 23.15 | 19.37 |
Solyc01g108410.1.1 | Tomato | mitochondrion | 22.99 | 19.04 |
Solyc10g084080.1.1 | Tomato | cytosol, extracellular | 14.96 | 18.52 |
Solyc01g111470.2.1 | Tomato | plastid | 21.42 | 18.28 |
Solyc02g068890.2.1 | Tomato | mitochondrion | 19.84 | 17.6 |
Solyc05g008560.1.1 | Tomato | mitochondrion | 20.63 | 17.37 |
Solyc06g010270.1.1 | Tomato | mitochondrion | 12.6 | 17.28 |
Solyc06g069700.2.1 | Tomato | plastid | 20.0 | 15.76 |
Solyc10g084090.1.1 | Tomato | cytosol | 18.74 | 8.9 |
Os03t0201200-01 | Rice | nucleus | 2.83 | 7.73 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:K4BEG2 |
PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF657 | InterPro:Pentatricopeptide_repeat | EnsemblPlantsGene:Solyc03g007390.2 |
EnsemblPlants:Solyc03g007390.2.1 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002768143 | SEG:seg | : |
Description
No Description!
Coordinates
chr3:+:1934183..1937655
Molecular Weight (calculated)
72191.6 Da
IEP (calculated)
7.981
GRAVY (calculated)
-0.089
Length
635 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLTQKSIKS TCSNVELLIN FNNRLNFSSL SSSNCLQILT DYNGSARPIS NPLHNFLPKT QNPQNTVSLI CSALKNGNND HLSLLQKTIR DNGLICYFSD
101: SEISRVLLRC QSDSFSALSF FNWVKNDLGV EPNTQNYCLV IHILTWTRNF SQAMKFLSEL VDLKRNGMED VDVFESLLSS SGLCNWDPVV FDMLIKAFLK
201: VNMVKDGFRA FRKTVKHGMY PSVISVNCLL NGLSKLNYSK KCWEVYAEMG RIGVHPNSCT FNILTHVLCK DEDVNKVNDF LVKMEEEGFQ PDIVTYNTLV
301: SSYCRKGRMK DAVHLYQIMY IRGVSPDLFT YTSLINGFCK KGNVKDAHQL FLRMADRGLK PDIIVYNTLI SGYCKDGMMQ EARSLLHDMI GEGMYPDKFT
401: CSVLVQGFQK QDNLVSAVNL VTELQRFRFI VSHDIYNYLI TALCIENRPF AAKALIHRVS GDRYEPGNMV YGELIESFCR CNFPDEALCL KAEMVSKDLK
501: PDIGTYRAII KCLCKLGRSM DANSLMREMT DFDVSLDIEV CRALINGHCR ENNFCEAQSL LSFFAQEFKI FDTVCYNTIV RLLSGEADIA KLMKFQDKMR
601: KVGFAPNQLT CKYIIDGLQK AVGVHKINSA WIHTS
101: SEISRVLLRC QSDSFSALSF FNWVKNDLGV EPNTQNYCLV IHILTWTRNF SQAMKFLSEL VDLKRNGMED VDVFESLLSS SGLCNWDPVV FDMLIKAFLK
201: VNMVKDGFRA FRKTVKHGMY PSVISVNCLL NGLSKLNYSK KCWEVYAEMG RIGVHPNSCT FNILTHVLCK DEDVNKVNDF LVKMEEEGFQ PDIVTYNTLV
301: SSYCRKGRMK DAVHLYQIMY IRGVSPDLFT YTSLINGFCK KGNVKDAHQL FLRMADRGLK PDIIVYNTLI SGYCKDGMMQ EARSLLHDMI GEGMYPDKFT
401: CSVLVQGFQK QDNLVSAVNL VTELQRFRFI VSHDIYNYLI TALCIENRPF AAKALIHRVS GDRYEPGNMV YGELIESFCR CNFPDEALCL KAEMVSKDLK
501: PDIGTYRAII KCLCKLGRSM DANSLMREMT DFDVSLDIEV CRALINGHCR ENNFCEAQSL LSFFAQEFKI FDTVCYNTIV RLLSGEADIA KLMKFQDKMR
601: KVGFAPNQLT CKYIIDGLQK AVGVHKINSA WIHTS
001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N
Arabidopsis Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.