Factsheet for Bra025578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42586	Canola	plastid	93.74	94.19
CDY50117	Canola	plastid	92.46	92.46
AT5G40400.2	Thale cress	cytosol	78.01	71.37
VIT_17s0000g03060.t01	Wine grape	plastid	53.77	50.76
KRH56553	Soybean	plastid	48.96	48.72
Solyc03g007390.2.1	Tomato	plastid	48.64	47.72
PGSC0003DMT400023499	Potato	plastid	47.99	47.54
Bra019985.1-P	Field mustard	cytosol	23.43	23.86
Bra015229.1-P	Field mustard	mitochondrion	24.24	23.85
Bra028204.1-P	Field mustard	cytosol	21.99	23.1
Bra020001.1-P	Field mustard	mitochondrion	20.39	21.17
Bra005695.1-P	Field mustard	mitochondrion	23.43	19.7
Bra024831.1-P	Field mustard	mitochondrion	23.11	19.67
Bra022891.1-P	Field mustard	plastid	19.26	19.54
Bra025651.1-P	Field mustard	mitochondrion	23.27	19.46
Bra035931.1-P	Field mustard	mitochondrion	19.74	19.01
Bra040883.1-P	Field mustard	endoplasmic reticulum	17.34	18.78
Bra038853.1-P	Field mustard	mitochondrion	20.39	18.25
Bra013432.1-P	Field mustard	cytosol	13.8	17.37
Bra017434.1-P	Field mustard	cytosol, plastid	15.25	17.06
Bra015447.1-P	Field mustard	cytosol	11.88	16.97
Bra024554.1-P	Field mustard	cytosol	7.54	13.91
Bra024552.1-P	Field mustard	cytosol	4.98	12.3
Bra002000.1-P	Field mustard	cytosol	5.14	10.56
Bra026410.1-P	Field mustard	mitochondrion	20.39	9.63
Os03t0201200-01	Rice	nucleus	2.25	6.01

Protein Annotations

EnsemblPlants:Bra025578.1	EnsemblPlants:Bra025578.1-P	EnsemblPlantsGene:Bra025578	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF657	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002544EC9	UniProt:M4E9X2	MapMan:35.1	:	:	:

Description

AT5G40400 (E=7e-259) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 18933 Blast hits to 5737 proteins in 174 species: Archae - 4; Bacteria - 8; Metazoa - 352; Fungi - 335; Plants - 17540; Viruses - 0; Other Eukaryotes - 694 (source: NCBI BLink).

Coordinates

chrA04:+:7735404..7737275

Molecular Weight (calculated)

71348.9 Da

IEP (calculated)

7.950

GRAVY (calculated)

-0.064

Length

623 amino acids

Sequence
(BLAST)

001: MKRISAINAT SLLKRDFSNH RFFSSSPSSS TLQLIPRCDD PPKPITFTPL YNLLPNTQNP NRIVDVICSS LNQRDSLSSN LHNEVKSLIP HLGHRQISRV
101: LLRFQSDATR ALAFFNWVKS DLGKTPNVGN YCLLLHVLAW SKKFPLAMQF LCELIELVVK EEEDVFSVLV SATEECNWDP VVFDILVKAY LKLGLVEESF
201: SAFRKVIAFG FRVSVVTCNH LLNGLLKLDL TDDCWRVYRV MCRVGIHPNA HTFNILTNAF CNGSGFNQVN DFLEKMEEEE GFEPDLVTYN TLVSSYCRRG
301: RLKEAFYLYK IMYRRRVVPD LVTYTSLIKG LCKDGRVREA HQTFHRMVDR GIKPDCVAYN TLVYAYCKEG MMEQAKRLLH EMLGNSVVPD RFTCKIIVEG
401: FVREGRLLAA VNFVVELTRL RVRIPFEVCS FLIESLCREG KPFAAKHLLE RISEEEGRKV KPETYNSLIE SFSRCDAIEE ALLLKEKLTS QNQVLDVNSY
501: RALIGCLCRI GRNREAESLM VEMVDSDVKP DCFICGALVN GYCKELDFGK AESLLSFFAM EFRIFDIESY NLLVKAILER GSGYKKVLEL QERMQRVGFV
601: PNTLSCKYMI QGLTQRDGLM SEM

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.